Table 1. sRNAs differentially expressed in wild-type and ΔrpoS strains.

sRNA	Mean rpoS	Mean WT	Fold Changea	Start	End	Strand
CsrC	4333	19747	0.26	4223741	4223984	+
CyaR	345	56	4.99	2282684	2282769	+
DsrA	694	217	2.83	2080053	2080139	−
GcvB	2	17	0.24	3155126	3155326	+
GlmY	7111	17770	0.43	2759217	2759400	−
IsrI	7	248	0.05	2812865	2813112	−
IstR-1,2	67	283	0.29	4011708	4011839	−
MicA	99	494	0.24	2987088	2987161	+
OmrA	28	621	0.07	3189931	3190017	−
OxyS	9	41	0.29	4356452	4356570	−
RybA	104	334	0.36	903092	903188	−
RybB	59	229	0.3	943606	943684	−
RybD	90	10	5.26	808431	808515	+
RydC	2789	402	5.33	1739650	1739715	+
RyeF	72	419	0.21	2012350	2012656	−
RygC	466	2565	0.22	3242088	3242232	+
RygD	913	3695	0.28	3380548	3380692	−
RyhB-1	124	1238	0.14	3729100	3729194	−
RyhB-2	165	4480	0.06	1362850	1362950	−
SdsR	3	4823	<0.001	1979458	1979560	−
SraC	122	17	5.37	1979380	1979690	+
SraL	38	23180	<0.001	4518412	4518552	−
sRNA10	6	117	0.09	680323	680422	−
SroC	13056	49251	0.32	729258	729410	−
STnc1060	32	109	0.35	467925	467990	−
STnc1080	133	42	2.76	1064537	1064598	−
STnc1110	13	204	0.1	1696589	1696782	+
STnc1200	12	2	3.79	926560	926629	−
STnc1220	1	9	0.26	1501842	1501914	−
STnc1280	763	290	2.41	2093821	2093893	+
STnc1300	373	129	2.57	2125107	2125245	+
STnc1330	6	1246	0.01	2322111	2322325	+
STnc1380	84	14	4.47	2783476	2783543	−
STnc1390	41	137	0.35	1294132	1294195	−
STnc150	4	30	0.2	1335643	1335799	−
STnc1560	97	312	0.36	2502911	2503019	+
STnc2080	45	3081	0.03	2813257	2813365	−
STnc290	144	26	3.81	3214058	3214136	−
STnc540	46	181	0.3	1429394	1429487	+
STnc570	461	2600	0.22	1603700	1604389	−
STnc580	13	1	4.66	1759908	1760029	−
STnc750	36	1258	0.05	3259604	3259692	−

^aFold change estimated by DESeq2 using normalized means.

(p<0.001).