Table 4.
Common signals between VarLD signals and bovine CNV
| Comparison | Chr | Signal position (bp) | CNV position (bp) | Author | Genes (*) |
|---|---|---|---|---|---|
| GIR/BSW |
1 |
70,765,503:70,792,506 |
70,749,256:70,782,268 |
[16,17] |
LMLN |
|
NEL/BSW |
3 |
15,271,777:15,311,541 |
15,239,708:15,333,979 |
[16] |
BT.58583 |
|
NEL/ANG |
15,299,719:15,400,121 |
[16,17] |
|||
|
GIR/BSW |
4 |
73,396,066:73,553,054 |
73,525,485:73,535,374 |
[17] |
ZNF804B |
|
GIR/ANG |
73,468,102:73,561,003 |
||||
|
NEL/BSW |
73,483,619:73,529,284 |
||||
|
NEL/ANG |
73,512,503:73,542,817 |
[16,17] |
|||
| GIR/NEL |
5 |
48,655,139:49,351,919 |
49,247,629:49,260,811 |
[16,17] |
TBC1D30 |
|
GIR/ANG |
6 |
1,129,004:1,201,370 |
1,193,082:1,294,965 |
[16,17] |
- |
|
NEL/ANG |
1,169,452:1,207,911 |
- |
|||
| GIR/NEL |
6 |
54,209,812:54,244,211 |
54,230,479:54,239,347 |
[16,17] |
- |
| GIR/NEL |
6 |
66,750,850:66,787,589 |
66,752,193:66,763,697 |
[16,17] |
- |
| GIR/NEL |
6 |
81,372,213:81,431,979 |
81,418,922:81,428,078 |
[16,17] |
- |
|
GIR/BSW |
81,574,642:81,625,162 |
81,459,939:81,580,677 |
TECRL |
||
|
GIR/ANG |
81,580,533:81,637,706 |
||||
|
BSW/ANG |
7 |
53,792,514:53,993,49 |
53,905,353:53,952,520 |
[16,17] |
PCDHB4 |
| 53,966,895:54,000,730 |
[17] |
PCDHB6 |
|||
| PCDHB7 | |||||
| GIR/NEL |
7 |
65,840,794:65,909,733 |
65,783,735:65,871,908 |
[16,17] |
- |
|
GIR/BSW |
8 |
46,292,757:46,328,656 |
46,318,922:46,341,524 |
[16,17] |
C8H9orf135 |
|
GIR/ANG |
46,309,661:46,327,604 |
||||
|
NEL/BSW |
46,312,788:46,316,213 |
||||
| NEL/ANG |
9 |
49,905,617:49,915,316 |
49,985,406:50,007,670 |
[17] |
ASCC3 |
|
GIR/BSW |
12 |
41,634,760:41,915,116 |
41,713,393:41,718,971 |
[16,17] |
- |
|
NEL/BSW |
41,664,252:41,803,562 |
- |
|||
|
GIR/BSW |
12 |
41,634,760:41,915,116 |
41,806,286:41,835,914 |
[16,17] |
- |
|
GIR/ANG |
41,788,070:41,814,404 |
||||
|
GIR/ANG |
12 |
41,987,029:42,007,452 |
41,947,274:41,976,705 |
[17] |
|
| 41,992,061:42,022,492 |
[16,17] |
- |
|||
| NEL/ANG |
12 |
60,197,449:60,278,968 |
60,210,227:60,213,095 |
[16,17] |
- |
| NEL/BSW |
15 |
663,684:677,309 |
547,375:843,231 |
[16,17] |
- |
|
NEL/BSW |
15 |
51,762,198:51,925,201 |
51,800,593:51,828,442 |
RRM1 |
|
|
NEL/ANG |
51,800,901:51,937,349 |
||||
| GIR/NEL |
20 |
40,153,984:40,330,326 |
40,254,029:40,255,874 |
[16,17] |
ADAMTS12 |
|
GIR/NEL |
21 |
60,490,921:60,601,371 |
60,520,424:60,545,084 |
[16,17] |
- |
| 60,560,357:60,579,349 | |||||
| BSW/ANG | 23 | 375,470:629,385 |
436,008:1,208,595 | [16,17] | KHDRBS2 |
| 756,762:853,782 |
The breed comparison where the signal came from, the chromosome number, the VarLD signal and CNV positions in bp, the author reporting the CNV, and the genes with a short description, are all reported here; several VarLD signals that coincide with the same CNV are indicated in bold characters, while several CNV concurring with one signal are indicated in italic characters; *Gene ID source: ENSEMBL: http://www.ensembl.org/.