Table 1.
Haplotypic frequencies, allelic richness, and heterozygosities of MHC class I loci in 6 wild panda populations
| |
|
Population |
|||||
|---|---|---|---|---|---|---|---|
| Locus | Haplotype | QLI (17) | MSH (19) | QLA (21) | DXL (19) | XXL (22) | LSH (22) |
|
Aime-C |
01 |
/ |
0.026 |
0.016 |
0.100 |
/ |
0.043 |
| |
02 |
0.368 |
0.250 |
0.250 |
0.067 |
0.107 |
0.357 |
| |
03 |
0.079 |
0.355 |
0.375 |
0.200 |
0.196 |
0.143 |
| |
04 |
/ |
/ |
0.031 |
/ |
0.018 |
/ |
| |
05 |
0.395 |
0.066 |
0.094 |
0.100 |
0.107 |
0.071 |
| |
06 |
0.079 |
0.105 |
0.109 |
0.467 |
0.107 |
0.157 |
| |
07 |
0.026 |
0.118 |
0.063 |
0.067 |
0.375 |
0.114 |
| |
08 |
0.053 |
0.079 |
0.063 |
/ |
0.089 |
0.071 |
| |
09 |
/ |
/ |
/ |
/ |
/ |
0.043 |
| |
AR |
5.736 |
6.498 |
7.018 |
6.000 |
6.497 |
7.519 |
| |
HO |
0.684 |
0.737 |
0.781 |
0.933 |
0.821 |
0.800 |
| |
HE |
0.711 |
0.785 |
0.804 |
0.738 |
0.792 |
0.812 |
|
Aime-F |
01 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
| |
AR |
/ |
/ |
/ |
/ |
/ |
/ |
| |
HO |
/ |
/ |
/ |
/ |
/ |
/ |
| |
HE |
/ |
/ |
/ |
/ |
/ |
/ |
|
Aime-I |
01 |
0.125 |
0.134 |
0.212 |
0.250 |
0.290 |
0.256 |
| |
02 |
0.438 |
0.500 |
0.455 |
0.219 |
0.210 |
0.207 |
| |
03 |
/ |
0.073 |
0.091 |
0.125 |
0.129 |
0.098 |
| |
04 |
0.188 |
0.232 |
0.167 |
0.375 |
0.113 |
0.256 |
| |
05 |
/ |
0.061 |
0.030 |
0.031 |
0.145 |
0.073 |
| |
06 |
0.146 |
/ |
/ |
/ |
0.097 |
0.073 |
| |
07 |
0.104 |
/ |
0.045 |
/ |
0.016 |
0.037 |
| |
AR |
4.993 |
4.842 |
5.528 |
4.938 |
6.458 |
6.613 |
| |
HO |
0.626 |
0.732 |
0.758 |
0.625 |
0.774* |
0.829 |
| |
HE |
0.741 |
0.734 |
0.777 |
0.756 |
0.832 |
0.814 |
|
Aime-L |
01 |
0.021 |
0.012 |
0.121 |
0.094 |
0.032 |
0.049 |
| |
02 |
0.167 |
0.226 |
0.303 |
0.219 |
0.226 |
0.232 |
| |
03 |
0.292 |
0.262 |
0.273 |
0.188 |
0.210 |
0.244 |
| |
04 |
0.146 |
0.286 |
0.106 |
0.156 |
0.113 |
0.244 |
| |
05 |
/ |
0.024 |
0.030 |
0.031 |
0.065 |
/ |
| |
06 |
0.375 |
0.190 |
0.167 |
0.250 |
0.129 |
0.171 |
| |
07 |
/ |
/ |
/ |
0.063 |
0.226 |
0.061 |
| |
AR |
4.624 |
4.946 |
5.69 |
6.935 |
6.663 |
5.749 |
| |
HO |
0.792* |
0.810 |
0.788 |
0.938 |
0.774 |
0.731 |
| |
HE |
0.740 |
0.789 |
0.803 |
0.843 |
0.824 |
0.802 |
| Total |
AR |
5.118 |
5.429 |
6.079 |
5.958 |
6.539 |
6.627 |
| |
HO |
0.701 |
0.760 |
0.776 |
0.832 |
0.790 |
0.787 |
| HE | 0.731 | 0.769 | 0.795 | 0.779 | 0.816 | 0.809 | |
Notes: The predominant haplotype of each population is marked in bold. The figures in parentheses are the number of haplotypes in each population. Asterisks denote significant deviations from HWE (P < 0.05).