Table 1.
Summary statistics of DNA polymorphisms in a worldwide sample of brown spot pathogen using four loci
| Locus (No. of isolates) | endoPG (142) W | endoPG (35) | OPA2-1 (35) | F3 (35) | OPA1-3 (35) | Combined (35) |
|---|---|---|---|---|---|---|
| No. of sites (A) |
427 (422) |
427 (421) |
538 (535) |
222 (220) |
503 (493) |
1672 (1686) |
| No. of poly. sites (PI/PUIB) |
21 (10/11) |
24 (8/16) |
20 (14/6) |
15 (8/7) |
75 (55/20) |
135 (77/58) |
| No. of haplotypesC |
13 |
13 |
7 |
7 |
12 |
24 |
| Haplotype diversity |
0.72 |
0.86 |
0.80 |
0.48 |
0.87 |
0.95 |
| Nucleotide diversity |
0.007 |
0.009 |
0.004 |
0.009 |
0.041 |
0.017 |
| Tajima’s D |
−0.78NS |
−1.10NS |
−1.70NS |
−1.35NS |
0.06NS |
−0.62NS |
| Fu and Li’s D |
−4.05S |
−2.99S |
−2.96S |
−1.60NS |
−0.16NS |
−1.47NS |
| Rec eventsR | N/A | 0 | 0 | 6 | 8 | N/A |
AExcluding indels.
BNumber of polymorphic sites (informative/uninformative).
CExcludes outgroup isolate, BMP2031 (A. tomato).
WIncludes all isolates in the worldwide dataset (ca.142).
NSNon-significant, SSignificant; P > 0.10.
RNumber of recombination events estimated by Recom v. 5.8 [59].