. 2014 Feb 7;12:7. doi: 10.1186/1477-5956-12-7

Table 1.

Proteins identified and analyzed by MALDI-TOF-TOF/MS

*Spot no*	*Protein name*	*Accession no.*	*Deduced apple genome ID*	*Protein MW/PI*	*Pep. count*	*Protein score*
Photosynthesis proteins
L8	ribulose-1,5-bisphosphate carboxylase	gi\|2961315	MDP0000597996	53314.4/6.14	5	253
L45	ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2	gi\|78100212	MDP0000944409	46944.1/4.84	12	494
L49	ribulose-1,5-bisphosphate carboxylase/oxygenase activase small protein isoform	gi\|115334979	MDP0000321244	47952.1/7.57	10	326
L50	Oxygen-evolving enhancer protein 2, chloroplastic; Short = OEE2;	gi\|11134051	MDP0000361338	28674.3/6.6	4	231
L51	ribulose 1,5-bisphosphate carboxylase	gi\|4206530	MDP0000597996	49888.8/5.94	3	223
L82	ribulose 1,5-bisphosphate carboxylase	gi\|10945633	MDP0000597996	52133/6.18	8	154
L85	ribulose-phosphate 4-epimerase	gi\|225457361	MDP0000137234	30146/8.93	5	533
L95	ribulose 1,5-bisphosphate carboxylase	gi\|371928199	MDP0000597996	49673/6.04	20	498
L15	Chlorophyll a-b binding protein 3C-like protein	gi\|357497757	MDP0000784451	24884.4/5.53	4	133
L19	putative chlorophyll a/b binding protein	gi\|397789264	MDP0000875642	16135/7.82	6	262
L61	Chlorophyll a-b binding protein 2, chloroplastic;	gi\|158562858	MDP0000708928	3798.9/8.2	4	212
L87	chlorophyll a-b binding protein 8, chloroplastic	gi\|225436257	MDP0000866655	29511.2/7.85	2	192
Amino acid metabolism related proteins
L43	Serine-type peptidase	gi\|357495999	MDP000065459	45945.4/6.79	9	267
L54	precursor of carboxylase p-protein 1, glycine decarboxylase complex	gi\|224088838	MDP0000588069	115985/6.51	11	407
L58	putative plastidic glutamine synthetase	gi\|26892040	MDP0000139493	47619.1/6.77	9	457
Transpot related proteins
L56	Transketolase, chloroplastic	gi\|75140229	MDP0000142098	73346.7/5.47	6	20-6
L81	alanine aminotransferase 3	gi\|351724777	MDP0000815368	53789.3/5.52	11	470
L99	PREDICTED: transketolase, chloroplastic-like	gi\|356536526	MDP0000142098	80689.8/6.12	11	299
L101	Transketolase	gi\|357445031	MDP0000142098	80087.5/6.00	10	219
Energy metabolism related proteins
L23	PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1	gi\|356538289	MDP0000811918	40803.8/8.7	14	477
L24	NAD dependent epimerase/dehydratase	gi\|255559448	MDP000019372	43230.8/8.75	6	243
Carbohydrate metabolism related proteins
L27	PREDICTED: triosephosphate isomerase	gi\|225449541	MDP0000152242	27396.2/6.34	5	373
L33	alcohol dehydrogenase	gi\|307135978	MDP0000239956	40657.6/8.53	3	138
L36	cytosolic malate dehydrogenase	gi\|78216493	MDP0000174740	35970.5/6.01	3	352
L40	glyceraldehyde-3-phosphate dehydrogenase A	gi\|381393060	MDP0000527995	43224.5/8.1	18	853
L41	PREDICTED: fructose-1,6-bisphosphatase, cytosolic	gi\|225460680	MDP0000251810	37554/6.03	7	332
L42	glyceraldehyde-3-phosphate dehydrogenase B	gi\|381393062	MDP0000835914	48490.9/8	21	790
L46	glyceraldehyde 3-phosphate dehydrogenase A subunit	gi\|62318887	MDP0000527995 c	17730.1/5.35	6	210
L47	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase;	gi\|3913711	MDP0000152497	53654.6/6.76	10	375
L53	alcohol dehydrogenase	gi\|307135978	MDP0000239956	40657.6/8.53	8	216
L59	chloroplast sedoheptulose-1,7-bisphosphatase	gi\|118175929	MDP0000244771	42824.9/6.06	9	377
L83	PREDICTED: triosephosphate isomerase	gi\|225449541	MDP0000152242	27396.2/6.34	6	266
L86	PREDICTED: pyruvate dehydrogenase E1 component subunit beta	gi\|357159289	MDP0000146411	40081.6/5.47	5	407
Binding proteins
L68	ATP synthase, subunit B	gi\|7578491	MDP0000565338	53365/5.57	15	752
L69	ATP synthase subunit B	gi\|91983091	MDP0000565338	51812.1/5.27	21	703
L71	ATP synthase, subunit B	gi\|7578491	MDP0000565338	53365/5.57	19	791
L72	putative ATP synthase subunit B	gi\|56784991	MDP0000565338	45936.9/5.33	17	971
L73	PREDICTED: ATP synthase subunit B, mitochondrial-like	gi\|225424142	MDP0000565338	59699.2/5.84	18	760
L77	ATP synthase, subunit B	gi\|7578491	MDP0000565338	53365/5.57	19	632
L78	ATP synthase CF1 alpha subunit	gi\|346683279	MDP000092905	55443.9/5.09	21	1100
L79	ATP synthase subunit B	gi\|91983091	MDP0000565338	51812.1/5.27	24	923
Antioxidant related proteins
L25	Probable aldo-keto reductase 2	gi\|378548276	MDP0000228499	38436.6/6.17	6	341
L37	aldo/keto reductase AKR	gi\|62526573	MDP0000228499	38026.5/6.38	10	483
Defense and stress related proteins
L13	class III endo-chitinase	gi\|33347391	MDP0000280265	17774.6/4.12	1	207
L16	heat shock protein 70	gi\|30962610	MDP0000322220	47584/5.1	9	106
L17	beta-1,3-glucanase	gi\|399137110	MDP0000570395	37551.2/5.07	4	258
L18	thioredoxin peroxidase	gi\|21912927	MDP000020081	30103.4/8.2	5	328
L22	thaumatine-like protein	gi\|20149274	MDP0000552328	22948.5/4.6	7	317
L28	ascorbate peroxidase	gi\|145581388	MDP0000199034	27711.8/5.53	6	414
L29	ascorbate peroxidase	gi\|319993039	MDP0000194474	12064.3/8.72	3	73
L30	early-responsive to dehydration 2	gi\|383100964	MDP0000322220	69263.1/5.19	11	149
L84	quinone oxidoreductase [Gymnadenia conopsea]	gi\|89276317	MDP0000393227	21631.1/6.06	2	159
L89	phi class glutathione S-transferase protein	gi\|329130898	MDP0000266097	23996.3/5.97	3	90
L90	IgE-binding protein MnSOD	gi\|10862818	MDP0000187714	22957.7/6.06	6	397
Unknown proteins
L20	uncharacterized protein LOC100805310	gi\|359806638	MDP0000875642	27959.1/5.29	9	353
L31	PREDICTED: uncharacterized protein At2g37660, chloroplastic	gi\|225440390	MDP0000176370	27681.5/5.85	2	150
L32	predicted protein	gi\|224087915	MDP0000641719	27403.9/5.74	9	464
L38	PREDICTED: clavaminate synthase-like protein At3g21360	gi\|225442460	MDP0000406399	36588.7/6.1	4	80
L57	predicted protein	gi\|224138316	MDP0000148186	45396.1/6.11	14	534

*In relative protein content graph, from left to right were Inline graphic : Control group 3 days post-treatment, : Inoculated group 3 days post-treatment, : Control group 6 days post-treatment, : Inoculated group, 6 days post-treatment respectively.