Table 3.
Counts of intact open reading frames for full length consensus sequences of each element class
| Class | Element name | Coordinates of ORF | # Intact |
|---|---|---|---|
| DNA Transposon |
Tc3-1_Hm |
120 - 1208 |
43 |
| NonLTR |
Jockey-1_Hm |
2980 - 4896 |
3 |
| |
Jockey-3_Hm |
2051 - 4969 |
2 |
| |
L2-1_Hm |
534 - 2924 |
1 |
| |
L2-7_Hm |
95 - 1828 |
1 |
| |
L2-9_Hm |
55 - 1530 |
3 |
| |
L2-13_Hm |
543 - 2975 |
1 |
| |
L2-14_Hm |
1468 - 4407 |
1 |
| |
L2-15_Hm |
505 - 1986 |
1 |
| |
Proto2-3_Hm |
111 - 1280 |
1 |
| |
R1-2_Hm |
1411 - 4557 |
2 |
| |
R4-2_Hm |
119 - 4207 |
1 |
| |
RTE-1_Hme |
616 - 3636 |
1 |
| |
RTE-3_Hm |
264 - 3233 |
6 |
| |
RTE-5_Hm |
1334 - 3874 |
2 |
| |
RTE-9_Hm |
723 - 1724 |
2 |
| |
RTE-10_Hm |
323 - 1639 |
1 |
| |
RTE-15_Hm |
69 - 1130 |
1 |
| |
RTE-20_Hm |
181 - 3144 |
3 |
| |
TRAS1_R1_Hm |
1299 - 3611 |
2 |
| |
Zenon-1_Hm |
172 - 3333 |
1 |
| |
Zenon-2_Hm |
590 - 3517 |
2 |
| LTR |
Gypsy-1_HMM-I |
13 - 4542 |
1 |
| |
Gypsy-2_HMM-I |
1071 - 5060 |
1 |
| |
Gypsy-3_HMM-I |
2741 - 4402 |
1 |
| |
Gypsy-5_HMM-I |
52 - 1716 |
1 |
| |
Gypsy-5_HMM-I |
2601 - 4148 |
1 |
| |
Gypsy-6_HMM-I |
84 - 2540 |
1 |
| |
Gypsy-6_HMM-I |
3008 - 4198 |
5 |
| |
Gypsy-7_HMM-I |
49 - 1272 |
1 |
| |
Gypsy-7_HMM-I |
1694 - 3433 |
1 |
| |
Gypsy-8_HMM-I |
1260 - 3167 |
1 |
| Gypsy-10_HMM-I | 1525 - 3489 | 1 |
Counts were determined as describe in the text.
Bolded elements indicate the highest count in each category.