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. 2014 May 5;5:197. doi: 10.3389/fmicb.2014.00197

Table 1.

Phylogenetic affiliations of the microbial reads identified at the genus level (at >0.1% abundance) by pyrosequencing of the 16S rRNA genes in the original oil-degrading methanogenic (planktonic) culture and after the inoculum was incubated in a sandstone-packed column.

Original enrichment culture Sand-packed column culture
Taxon (genus) % of sequence reads Taxon (genus) % of sequence reads
Smithella 27.57 Methanobacterium 55.90
Methanosaeta 25.48 Pseudomonas 16.33
Methanoculleus 22.95 Methanocalculus 4.91
Methanocalculus 5.52 Eggerthella 3.52
Sedimentibacter 5.23 Halomonas 3.20
Desulfotomaculum 3.27 Methanoculleus 2.88
Desulfobacterium 2.14 Clostridium 2.37
Kosmotoga 1.97 Desulfovibrio 1.28
Thermanaerovibrio 1.79 Sedimentibacter 1.14
Petrotoga 0.95 Sphingomonas 0.94
Desulfuromonas 0.53 Methanosaeta 0.84
Syntrophorhabdus 0.48 Ralstonia 0.69
Desulfovibrio 0.38 Methylobacterium 0.53
Methanolinea 0.25 Geovibrio 0.46
Spirochaeta 0.22 Sediminibacterium 0.39
Tissierella 0.20 Methanomethylovorans 0.37
Leptolinea 0.17 Desulfuromonas 0.34
Fastidiosipila 0.16 Pelomonas 0.30
Anaerovorax 0.12 Tepidanaerobacter 0.27
Others 0.64 Burkholderia 0.25
Bacillus 0.23
Brevundimonas 0.21
Spirochaeta 0.21
Microbacterium 0.18
Alicyclobacillus 0.18
Methanofollis 0.16
Thauera 0.16
Koelreuteria 0.16
Rhodococcus 0.14
Thiobacillus 0.11
Bradyrhizobium 0.11
Others 1.26