Table 1.
Phylogenetic affiliations of the microbial reads identified at the genus level (at >0.1% abundance) by pyrosequencing of the 16S rRNA genes in the original oil-degrading methanogenic (planktonic) culture and after the inoculum was incubated in a sandstone-packed column.
| Original enrichment culture | Sand-packed column culture | ||
|---|---|---|---|
| Taxon (genus) | % of sequence reads | Taxon (genus) | % of sequence reads |
| Smithella | 27.57 | Methanobacterium | 55.90 |
| Methanosaeta | 25.48 | Pseudomonas | 16.33 |
| Methanoculleus | 22.95 | Methanocalculus | 4.91 |
| Methanocalculus | 5.52 | Eggerthella | 3.52 |
| Sedimentibacter | 5.23 | Halomonas | 3.20 |
| Desulfotomaculum | 3.27 | Methanoculleus | 2.88 |
| Desulfobacterium | 2.14 | Clostridium | 2.37 |
| Kosmotoga | 1.97 | Desulfovibrio | 1.28 |
| Thermanaerovibrio | 1.79 | Sedimentibacter | 1.14 |
| Petrotoga | 0.95 | Sphingomonas | 0.94 |
| Desulfuromonas | 0.53 | Methanosaeta | 0.84 |
| Syntrophorhabdus | 0.48 | Ralstonia | 0.69 |
| Desulfovibrio | 0.38 | Methylobacterium | 0.53 |
| Methanolinea | 0.25 | Geovibrio | 0.46 |
| Spirochaeta | 0.22 | Sediminibacterium | 0.39 |
| Tissierella | 0.20 | Methanomethylovorans | 0.37 |
| Leptolinea | 0.17 | Desulfuromonas | 0.34 |
| Fastidiosipila | 0.16 | Pelomonas | 0.30 |
| Anaerovorax | 0.12 | Tepidanaerobacter | 0.27 |
| Others | 0.64 | Burkholderia | 0.25 |
| Bacillus | 0.23 | ||
| Brevundimonas | 0.21 | ||
| Spirochaeta | 0.21 | ||
| Microbacterium | 0.18 | ||
| Alicyclobacillus | 0.18 | ||
| Methanofollis | 0.16 | ||
| Thauera | 0.16 | ||
| Koelreuteria | 0.16 | ||
| Rhodococcus | 0.14 | ||
| Thiobacillus | 0.11 | ||
| Bradyrhizobium | 0.11 | ||
| Others | 1.26 | ||