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. 2014 May 6;2:e356. doi: 10.7717/peerj.356

Table 1. Summary statistics describing genome assemblies of Meloidogyne.

Species Meloidogyne hapla Meloidogyne incognita Meloidogyne floridensis
Source NCSU/WormBase WS227 INRA/WormBase WS227 959 Nematode Genomes Project
Data URL ftp://ftp.wormbase.org/pub/wormbase/species/m_hapla/ ftp://ftp.wormbase.org/pub/wormbase/species/m_incognita/ http://downloads.nematodegenomes.org
Citation Opperman et al. (2008) Abad et al. (2008) This work
Maximum scaffold length 360,446 154,116 40,762
Number of scaffolds 3,452 9,538 81,111
Assembled size (bp) 53,017,507 82,095,019 99,886,934
Scaffold N50* (bp) 37,608 12,786 3,516
GC% 27.4 31.4 29.7
CEGMA** completeness
Full/Partial
92.74/94.35 75.00/77.82 60.08/72.18
Predicted proteins
(used for clustering***)
13,072 (12,229) 20,359 (17,999) 15,327 (15,121)

Notes.

*

N50, weighted median contig length; the contig length at which 50% of the assembled genome is present in contigs of that or greater length.

**

CEGMA, Core Eukaryotic Genes Mapping Approach (Parra, Bradnam & Korf, 2007).

***

Predicted proteins used for clustering and inferring phylogenies after filtering for length >50 amino acids (see Methods).