Table 2. Streptomyces spp. PVA94-07 and GBA94-10 genome features compared to those of S. albus J1074.
Attribute | PVA 94-07 | GBA 94-10 | J1074 | |||
Value | % of totala | Value | % of totala | Value | % of totala | |
Size (bp) | 7,104,210 | 100.0 | 7,221,787 | 100.0 | 6,841,649 | 100.0 |
G+C content (bp) | 5,191,040 | 73.1 | 5,271,250 | 73.0 | 5,016,384 | 73.3 |
Coding region (bp) | 6,108,726 | 86.0 | 6,150,735 | 85.2 | 5,940,480 | 86.8 |
Number of replicons | 3 | 2 | 1 | |||
Total genes | 6,095 | 100.0 | 6,239 | 100.0 | 5,915 | 100.0 |
RNA genes | 91 | 1.5 | 91 | 1.5 | 83 | 1.4 |
rRNA operons | 7 | 7 | 7 | |||
tRNA genes | 70 | 1.2 | 70 | 1.1 | 66 | 1,1 |
Protein-coding genes | 6,004 | 98.5 | 6,148 | 98.5 | 5,832 | 98.6 |
Genes with function prediction (protein) | 5,128 | 84.1 | 5,261 | 84.3 | 4,653 | 79.8 |
Genes assigned to NOGs | 4,708 | 77.2 | 4,852 | 77.8 | 4,422 | 74.8 |
Genes in paralog clusters | 3,294 | 54.0 | 3,317 | 53.2 | 3,467 | 58.6 |
Proteins with signal peptides | 527 | 8.6 | 535 | 8.6 | 517 | 8.7 |
Proteins with transmembrane helices | 1,357 | 22.3 | 1,388 | 22.3 | 1,418 | 24.0 |
The total is based on either the size of the genome in base pairs or the total number of genes in the annotated genome.