Table 3. Motifs affected by promoter sequence polymorphism between Falcon and Azhul.

Adjacent gene	Bp upstream of ATG acpoisiont	strand	Motif function	Motif sequence	Sequence
					Falcon	Azhul
VTE4	293	+	Promoter of transcription start	TATA	TACA	TATA
	328	+	Cis-acting element, transcription start	CCAAT	TCAAT	CCAAT
HGGT	381	+	Cis-acting element, low temperature response	CCGAAA	ACCGAAA	ACCCGAAA
	452	+	Promoter of transcription start	TATAAA	TATATG	TATAAA
	458	-	Promoter of transcription start	TATACA	TATACC	TATACA
	518	+	Light response element	AGAGATG	____ATG	AGAGATG
	534	+	Cis-acting element, endosperm expression	GTCAT	GTCGT	GTCAT
	579	+	Auxin-responsive element	AACGAC	AACCAC	AACGAC
	581	-	Cis-acting element, MeJA responsiveness	TGACG	TGACC	TGACG
	620	-	Cis-acting element, low temperature response	CCGAAA	CTGAAA	CCGAAA
	824	-	MYB binding site, drought-inducibility	TAACTG	TAACTGG	TAACTGT
	1006	+	Cis-acting element, light responsiveness	CACATGG	ACACATGG	GCACATGG