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. Author manuscript; available in PMC: 2015 Apr 5.
Published in final edited form as: J Comput Chem. 2014 Apr 5;35(9):711–721. doi: 10.1002/jcc.23544

Figure 1.

Figure 1

A sagittal view of the all-atom MD simulation setup with different dsDNA trimers blocking a nanopore perforated in the Si3N4 partition, shown in white. The blocking DNA molecule is shown as a ball-and stick, while the K+ and Cl- counterions are shown as magenta and green spheres, respectively. The solvent molecules are shown in transparent navy.