Table 1.
Summary of benchmark datasets.
| Library | Species | Source | #Reads | #Bases (Gb) | #Coverage (X) | Insert size (bp) | Platform | Reads |
|---|---|---|---|---|---|---|---|---|
| GENOMIC LIBRARIES | ||||||||
| Eco180 | Escherichia coli | Invivogen | 2,823,400 | 0.28 | 70.59 | 180 | MiSeq | 100PE (v2) |
| Eco300 | Escherichia coli | Invivogen | 3,325,790 | 0.33 | 83.14 | 300 | MiSeq | 100PE (v2) |
| Eco600 | Escherichia coli | Invivogen | 3,369,406 | 0.34 | 84.24 | 600 | MiSeq | 100PE (v2) |
| Eco3K | Escherichia coli | Invivogen | 17,479,364 | 1.75 | 436.98 | 2500 | GAIIx | 100PE (v5) |
| Ath180 | Arabidopsis thaliana | Amsbio | 59,777,644 | 5.98 | 46.7 | 180 | HiSeq 2500 | 100PE (rapid) |
| Ath300 | Arabidopsis thaliana | Amsbio | 72,813,974 | 7.28 | 56.89 | 300 | HiSeq 2500 | 100PE (rapid) |
| Ath600 | Arabidopsis thaliana | Amsbio | 58,823,560 | 5.88 | 45.96 | 600 | HiSeq 2500 | 100PE (rapid) |
| Hsa180 | Homo sapiens | Coriell | 318,394,090 | 31.84 | 10.61 | 180 | HiSeq 2500 | 100PE (rapid) |
| Hsa300 | Homo sapiens | Coriell | 319,230,116 | 31.92 | 10.64 | 300 | HiSeq 2500 | 100PE (rapid) |
| Hsa600 | Homo sapiens | Coriell | 255,145,408 | 25.51 | 8.5 | 600 | HiSeq 2500 | 100PE (rapid) |
| EH-mock | Homo sapiens and Escherichia coli | Hsa300 Eco300 | 283,522,600 | 28.35 | 8.96 | 300 | HiSeq 2500 | 100PE (rapid) |
| TRANSCRIPTOME LIBRARIES | ||||||||
| HsaRNA1 | Homo sapiens | Ambion | 111,953,730 | 11.2 | 44.50 | 200 | HiSeq 2500 | 100PE (rapid) |
| HsaRNA2 | Homo sapiens | Ambion | 99,968,630 | 10 | 39.74 | 201 | HiSeq 2500 | 100PE (rapid) |
| HsaRNA3 | Homo sapiens | Ambion | 79,656,332 | 7.97 | 31.66 | 202 | HiSeq 2500 | 100PE (rapid) |