Table 4.
Mapping statistics for RNAseq libraries.
| Sample ID | #Reads mapped | %Reads mapped | #Duplicate reads | %Duplicate reads | Mean insert length | SD insert length |
|---|---|---|---|---|---|---|
| ALIGNMENT TO GENOME hg19 | ||||||
| HsaRNA1 | 102,189,446 | 91.28 | 50,803,861 | 49.72 | 215.99 | 72.03 |
| HsaRNA2 | 72,036,569 | 90.43 | 32,114,542 | 44.58 | 184.88 | 64.15 |
| HsaRNA3 | 91,195,551 | 91.22 | 45,907,384 | 50.34 | 211.94 | 67.64 |
| ALIGNMENT TO TRANSCRIPTOME | ||||||
| HsaRNA1 | 101,085,843 | 90.29 | 48,569,451 | 48.05 | 221.99 | 73.19 |
| HsaRNA2 | 72,043,659 | 90.44 | 30,536,011 | 42.39 | 191.66 | 67.62 |
| HsaRNA3 | 90,151,071 | 90.18 | 43,899,305 | 48.70 | 217.69 | 68.43 |
| ALIGNMENT TO CLC ASSEMBLY | ||||||
| HsaRNA1 | 102,553,145 | 91.60 | 50,224,113 | 48.97 | 214.16 | 67.59 |
| HsaRNA2 | 72,815,405 | 91.41 | 31,802,909 | 43.68 | 184.07 | 62 |
| HsaRNA3 | 91,194,129 | 91.22 | 45,376,410 | 49.76 | 210.12 | 63.27 |
| ALIGNMENT TO SOAPdenovo-TRANS ASSEMBLY | ||||||
| HsaRNA1 | 105,695,602 | 94.41 | 50,837,146 | 48.10 | 213.49 | 67.4 |
| HsaRNA2 | 74,505,094 | 93.53 | 31,718,199 | 42.57 | 183.55 | 61.72 |
| HsaRNA3 | 94,064,116 | 94.09 | 45,826,021 | 48.72 | 209.46 | 63.14 |