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. 2014 May 12;205(3):409–428. doi: 10.1083/jcb.201308031

Table 1.

Oligonucleotide primers used for quantitative real-time RT-PCR

Gene Primer sequence (strand) Product size Temperature PCR cycles Reference or accession no.
bp °C
E-cadherin (Cdh1) 5′-CTGCGCTGGATAGTGTGTGT-3′ (+) 187 58 40 NM_009864
5′-TGGCATGCACCTAAGAATCA-3′ (−)
Keratin-19 (Krt19) 5′-GATCAGCGGTTTTGAAGCCC-3′ (+) 195 58 40 NM_008471
5′-GTCTCGCTGGTAGCTCAGAT-3′ (−)
Mucin-1 (Muc1) 5′-AGACCCCAGCTCCAACTACT-3′ (+) 178 58 40 NM_013605
5′-TGACTTCACGTCAGAGGCAC-3′ (−)
N-cadherin (Cdh2) 5′-GAGAGGCCTATCCATGCTGA-3′ (+) 204 58 40 NM_007664
5′-CGCTACTGGAGGAGTTGAGG-3′ (−)
Vimentin (Vim) 5′-GTGCGCCAGCAGTATGAAAG-3′ (+) 110 58 40 NM_011701
5′-GCATCGTTGTTCCGGTTGG-3′ (−)
Fibronectin (Fn1) 5′-CCCAGACTTATGGTGGCAATTC-3′ (+) 200 58 40 NM_010233
5′-AATTTCCGCCTCGAGTCTGA-3′ (−)
Hmga2 5′-AGCAAAAACAAGAGCCCCTCTA-3′ (+) 100 58 40 Thuault et al., 2006
5′-ACGACTTGTTGTGGCCATTTC-3′ (−)
Snail1 (Snai1) 5′-CCACTGCAACCGTGCTTTT-3′ (+) 66 58 40 Thuault et al., 2008
5′-CACATCCGAGTGGGTTTGG-3′ (−)
Zeb1 5′-ACAAGACACCGCCGTCATTT-3′ (+) 120 58 40 Thuault et al., 2008
5′-GCAGGTGAGCAACTGGGAAA-3′ (−)
Gapdh 5′-TGTGTCCGTCGTGGATCTGA-3′ (+) 76 58 40 Valcourt et al., 2007
5′-CCTGCTTCACCACCTTCTTGA-3′ (−)

Accession numbers were obtained from GenBank.