Table 3.
Cross-validation results for experiment 1. AUC values above 0.60 and log-rank p-values below 0.05 are highlighted with an asterisk. Missing log-rank values could not be calculated because all predictions were for the same class
| Clinical | Treatments | Histology | DNA Methylation | Somatic Mutations | DNA Copy Number | mRNA Expression | miRNA Expression | All Data | ||
|---|---|---|---|---|---|---|---|---|---|---|
| AUC | C5.0 | 0.50 | 0.50 | 0.50 | 0.49 | 0.50 | 0.50 | 0.50 | 0.54 | 0.55 |
| NBC | 0.59 | 0.71* | 0.50 | 0.55 | 0.56 | 0.52 | 0.57 | 0.54 | 0.56 | |
| SVM | 0.46 | 0.49 | 0.54 | 0.56 | 0.39 | 0.54 | 0.54 | 0.59 | 0.64* | |
| Log-rank | C5.0 | – | – | – | 0.33 | – | 0.43 | 0.89 | 0.99 | 0.0034* |
| NBC | 4.5e-05* | 0.00039* | 0.62 | 0.43 | 0.39 | 0.56 | 0.11 | 0.66 | 0.38 | |
| SVM | 0.24 | – | – | 0.037* | 0.23 | 0.08 | 0.55 | – | 0.023* |