TABLE 1.
Statistics for the de novo genome assemblies of B. licheniformis strains G-1, F1-1, and F2-1 using VAGUE
| Statistic | Strain G-1 | Strain F1-1 | Strain F2-1 |
|---|---|---|---|
| No. of input reads | 60,000,000 | 55,000,000 | 20,000,000 |
| No. of reads used | 53,905,237 | 49,623,177 | 14,524,929 |
| k-mer size used | 85 | 81 | 77 |
| N50 of contig size (bp) | 504,613 | 661,289 | 317,026 |
| Total no. of nucleotides in assembled genomes | 4,430,231 | 4,112,350 | 4,240,430 |
| No. of contigs | 37 | 30 | 49 |
| GC content (%) | 45.7 | 46.3 | 46.1 |
| Contig size (bp) | |||
| Shortest | 508 | 540 | 566 |
| Median | 27,774 | 55,777 | 9,175 |
| Mean | 119,736 | 137,078 | 86,539 |
| Maximum | 1,169,746 | 1,425,480 | 665,380 |
| Calculated genome coveragea | 1,289× | 1,187× | 347× |
a
Calculated based on the genome size of B. licheniformis ATCC 14580 (NC_006322.1).