TABLE 2.
Annotation of Prasinovirus OTU for a nucleotide distance of 26%a
| OTU | No. of genotypes | OTU representative | Best BLAST hit | Accession no. | Max identity (%) | Query coverage (%) |
|---|---|---|---|---|---|---|
| OTU7_PolB | 159 | PC.27_18416 | Clone SO98-2 | AF405573 | 83 | 100 |
| OTU2_PolB | 122 | PC.23_8374 | Clone KBvp-12 | EU889365 | 85 | 99 |
| OTU3_PolB | 107 | PC.21_11386 | BpV178 | FJ267518 | 76 | 100 |
| OTU4_PolB | 22 | PC.25_79887 | Clone KBvp-7 | EU889360 | 90 | 99 |
| OTU1_PolB | 21 | PC.31_17112 | OlV360 | GQ412085 | 84 | 100 |
| OTU5_PolB | 20 | PC.23_6189 | Clone CL1a-44 | EU336476 | 75 | 97 |
| OTU6_PolB | 8 | PC.21_11235 | Clone Lake227_ September2a_2004 | EU408237 | 76 | 98 |
| OTU11_PolB | 8 | PC.27_19315 | BpV178 | FJ267518 | 79 | 99 |
| OTU12_PolB | 5 | PC.23_8155 | Clone KBvp-18 | EU889371 | 78 | 99 |
| OTU13_PolB | 5 | PC.25_88578 | Clone LO.16Jul08.8 | HM750210 | 77 | 100 |
| OTU14_PolB | 5 | PC.31_14701 | Clone KBvp-14 | EU889367 | 79 | 98 |
| OTU16_PolB | 2 | PC.31_15216 | Clone LO1b-17 | EU336662 | 74 | 100 |
| OTU8_PolB | 1 | PC.21_11300 | BpV2 | HM004430 | 72 | 99 |
| OTU9_PolB | 1 | PC.21_11437 | Unknown | Unknown | Unknown | Unknown |
| OTU10_PolB | 1 | PC.23_6198 | Clone SOLa09 | HQ424379 | 86 | 100 |
| OTU15_PolB | 1 | PC.29_8062 | Clone PSC99-1 | AF405597 | 82 | 100 |
| OTU17_PolB | 1 | PC.31_17203 | Clone KBvp-12 | EU889365 | 83 | 99 |
| OTU4_MCP6 | 332 | PC.26_22014 | Clone OTU/P06-04 | EU006619 | 86 | 99 |
| OTU3_MCP6 | 255 | PC.28_13239 | BpV2 | HM004430 | 80 | 100 |
| OTU1_MCP6 | 55 | PC.22_12013 | OtV1 | FN386611 | 79 | 100 |
| OTU5_MCP6 | 35 | PC.30_2339 | Clone P3 | FJ791177 | 76 | 99 |
| OTU9_MCP6 | 22 | PC.30_8703 | ORtV6 | JN225873 | 82 | 100 |
| OTU2_MCP6 | 11 | PC.24_1066 | OtV2 | FN600414 | 84 | 100 |
| OTU13_MCP6 | 9 | PC.32_23329 | ORtV6 | JN225873 | 94 | 100 |
| OTU8_MCP6 | 5 | PC.30_13495 | OtV1 | FN386611 | 72 | 99 |
| OTU6_MCP6 | 3 | PC.32_23331 | Clone OTU/P06-04 | EU006619 | 73 | 94 |
| OTU10_MCP6 | 3 | PC.22_18937 | MpV1 | HM004429 | 88 | 99 |
| OTU7_MCP6 | 1 | PC.22_18719 | OlV1 | HM004431 | 73 | 99 |
| OTU11_MCP6 | 1 | PC.22_19267 | Unknown | Unknown | Unknown | Unknown |
| OTU12_MCP6 | 1 | PC.24_1212 | MpV1 | HM004429 | 80 | 97 |
| OTU14_MCP6 | 1 | PC.30_13516 | Unknown | Unknown | Unknown | Unknown |
a
OTU were sorted according to their total numbers of sequences. Representative sequences from each of the OTU of the PolB and MCP6 genes were BLASTed against the nucleotide collection of the NCBI database.