TABLE 5.
Gene | −ln La | Difference in −ln Lb | Pc |
---|---|---|---|
Off-island genes | |||
SMc00019 | 7,374.87 | 331.96 | 0.281 |
truA | 7,333.84 | 290.93 | 0.314 |
thrA | 7,266.93 | 224.02 | 0.373 |
hsfA | 7,600.97 | 558.07 | 0.11 |
exoN | 7,477.30 | 434.40 | 0.198 |
phyR | 7,699.41 | 656.50 | 0.071 |
glyA | 7,459.06 | 416.15 | 0.213 |
fabB | 7,658.13 | 615.22 | 0.087 |
All off-island genes | 7,111.34 | 68.48 | 0.404 |
Island genes | |||
rhcC2 | 15,655.20 | 8,612.30 | 0.000* |
trpD | 13,532.42 | 6,489.51 | 0.000* |
fixA | 14,849.94 | 7,807.03 | 0.000* |
nifA | 15,863.37 | 8,820.46 | 0.000* |
nifH | 14,704.16 | 7,661.25 | 0.000* |
nodV | 14,933.56 | 7,890.65 | 0.000* |
nodC | 15,866.32 | 8,823.41 | 0.000* |
All island genes | 12,205.51 | 5,162.61 | 0.000* |
−ln L, negative log-likelihood values correspond to those for the constrained topology.
Score differences between unconstrained and constrained trees.
Significance of difference in −ln L scores achieved by constrained and unconstrained trees, as assessed by SH test. *, P < 0.05.