. 2014 Jun;34(11):1911–1928. doi: 10.1128/MCB.01013-13

TABLE 2.

ChIP-Seq data sets

ChIP sample (cell type and infection condition)^a	Clone	Alignment to genome reference sequence hg19^b
ChIP sample (cell type and infection condition)^a	Clone	Total no. of reads	No. of mapped reads	% mapped
E4 + shNELF	N1C6	73,960,658	54,109,686	73.16
E4 + shNELF + TNF-α	N1C6	74,824,356	55,239,884	73.83
E4 + Scr shRNA	N1D9	67,786,174	45,009,143	66.40
E4 + Scr shRNA + TNF-α	N1D9	77,884,760	56,105,949	72.04

E4 cells were infected with a lentiviral vector expressing either a scrambled (Scr) shRNA (controls) or an shRNA targeting NELF (shNELF) and were either untreated or treated with TNF-α for 60 min.

Data were deposited in the GEO database under accession number GSE47481. hg19, human genome build 19.