TABLE 2.
Alignments of UL37N with components of MTCsa
| Protein | Z-score | RMSD | No. of aligned residues | % identity |
|---|---|---|---|---|
| Tip20 | 5.4 (3.8) | 10.1 (3.8) | 186 (92) | 4 (14) |
| Sec6 | 5.0 (5.1) | 3.9 (3.7) | 145 (111) | 7 (8) |
| Exo70 | 4.4 (5.8) | 15.7 (3.3) | 182 (123) | 6 (9) |
| Dsl1 | 4.2 (5.7) | 11.1 (3.8) | 159 (98) | 6 (7) |
| Cog4 | 3.6 (3.8) | 4.7 (4.6) | 135 (107) | 10 (10) |
| Sec15 | 3.2 (4.4) | 3.4 (3.5) | 72 (97) | 4 (4) |
| Exo84 | 2.5 (5.4) | 4.1 (4.0) | 75 (102) | 4 (9) |
a
All alignments were carried out using the Dali server (42). Either the entire UL37N or just the helical bundle from residues 1 to 136 (for which the data are given in parentheses) was used in the Dali search.