Table 1.
Background data for the thirty-one M. bovis strains analyzed in this study
| Sample ID | Herd of origin | Date | Sample type |
GenBank accession numbers |
Copy numbers of tandem repeats |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fusA | gyrB | lepA | rpoB | TR14 | TR29 | TR30 | TR31 | TR35 | TR40-41 | TR49-51 | TR52 | TR59 | ||||
| PG45 |
Connecticut |
1961 |
Lung |
JQ031392 |
JQ031411 |
JQ031435 |
JQ031493 |
2.2 |
4.8 |
2.3 |
5.8 |
4.0 |
4.0 |
2.2 |
4.0 |
2.4 |
| MYC2 |
Püspökhatvan |
2011 |
Lung |
KF926436 |
KF926437 |
KF926438 |
KF926439 |
- |
- |
3.3 |
- |
3.0 |
- |
1.2 |
- |
- |
| MYC22 |
Sümeg |
2012 |
Lung |
KF926440 |
KF926441 |
KF926442 |
KF926443 |
- |
0.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
3.0 |
2.4 |
| MYC30 |
Bugyi |
2012 |
Lung |
KJ438237 |
KJ438174 |
KJ438195 |
KJ438216 |
- |
0.8 |
2.3 |
5.8 |
3.0 |
8.0 |
1.2 |
3.0 |
2.4 |
| MYC42 |
Nemti |
2012 |
Lung |
KJ438238 |
KJ438175 |
KJ438196 |
KJ438217 |
- |
12.8 |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC43 |
Zsana |
2012 |
Lung |
KF926444 |
KF926445 |
KF926446 |
KF926447 |
- |
2.8 |
3.3 |
- |
3.0 |
11.0 |
1.2 |
3.0 |
2.4 |
| MYC44 |
Győrszentiván |
2012 |
Lung |
KJ438239 |
KJ438176 |
KJ438197 |
KJ438218 |
- |
2.8 |
3.3 |
- |
3.0 |
- |
0.6 |
3.0 |
1.4 |
| MYC45 |
Budapest |
2012 |
Lung |
KJ438240 |
KJ438177 |
KJ438198 |
KJ438219 |
- |
2.8 |
3.3 |
- |
3.0 |
11.0 |
0.6 |
3.0 |
1.4 |
| MYC46 |
Budapest |
2012 |
Lung |
KF926448 |
KF926449 |
KF926450 |
KF926451 |
- |
2.8 |
3.3 |
- |
3.0 |
11.0 |
0.6 |
3.0 |
1.4 |
| MYC47 |
Dabas |
2012 |
Lung |
KJ438241 |
KJ438178 |
KJ438199 |
KJ438220 |
- |
2.8 |
3.3 |
- |
3.0 |
11.0 |
1.2 |
3.0 |
- |
| MYC48 |
Ősi |
2012 |
Nasal swab |
KJ438242 |
KJ438179 |
KJ438200 |
KJ438221 |
- |
- |
3.3 |
- |
3.0 |
- |
1.2 |
- |
- |
| MYC49 |
Ősi |
2012 |
Nasal swab |
KF926452 |
KF926453 |
KF926454 |
KF926455 |
- |
12.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC50 |
Ősi |
2012 |
Lung |
KJ438243 |
KJ438180 |
KJ438201 |
KJ438222 |
- |
12.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC51 |
Ősi |
2012 |
Nasal swab |
KJ438244 |
KJ438181 |
KJ438202 |
KJ438223 |
- |
12.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC52 |
Solt |
2012 |
Lung |
KJ438245 |
KJ438182 |
KJ438203 |
KJ438224 |
2.2 |
4.8 |
2.3 |
7.8 |
4.0 |
4.0 |
2.2 |
4.0 |
2.4 |
| MYC53 |
Solt |
2012 |
Lung |
KF926456 |
KF926457 |
KF926458 |
KF926459 |
2.2 |
4.8 |
2.3 |
7.8 |
4.0 |
4.0 |
2.2 |
4.0 |
2.4 |
| MYC65 |
Csengersima |
2012 |
Nasal swab |
KJ438246 |
KJ438183 |
KJ438204 |
KJ438225 |
- |
1.8 |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC66 |
Csengersima |
2012 |
Nasal swab |
KJ438247 |
KJ438184 |
KJ438205 |
KJ438226 |
- |
- |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
6.0 |
2.4 |
| MYC67 |
Csengersima |
2012 |
Lung |
KF926460 |
KF926461 |
KF926462 |
KF926463 |
- |
- |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
6.0 |
2.4 |
| MYC68 |
Csengersima |
2012 |
Lung |
KJ438248 |
KJ438185 |
KJ438206 |
KJ438227 |
- |
- |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
6.0 |
2.4 |
| MYC69 |
Komárom |
2013 |
Nasal swab |
KJ438249 |
KJ438186 |
KJ438207 |
KJ438228 |
- |
1.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC70 |
Komárom |
2013 |
Nasal swab |
KJ438250 |
KJ438187 |
KJ438208 |
KJ438229 |
- |
1.8 |
3.3 |
4.8 |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC71 |
Komárom |
2013 |
Nasal swab |
KJ438251 |
KJ438188 |
KJ438209 |
KJ438230 |
- |
1.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC72 |
Komárom |
2013 |
Nasal swab |
KJ438252 |
KJ438189 |
KJ438210 |
KJ438231 |
- |
1.8 |
3.3 |
4.8 |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC73 |
Komárom |
2013 |
Nasal swab |
KJ438253 |
KJ438190 |
KJ438211 |
KJ438232 |
- |
1.8 |
3.3 |
4.8 |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC74 |
Komárom |
2013 |
Nasal swab |
KF926464 |
KF926465 |
KF926466 |
KF926467 |
- |
1.8 |
3.3 |
4.8 |
- |
8.0 |
1.2 |
4.0 |
- |
| MYC75 |
Komárom |
2013 |
Nasal swab |
KJ438254 |
KJ438191 |
KJ438212 |
KJ438233 |
- |
1.8 |
3.3 |
- |
3.0 |
8.0 |
1.2 |
4.0 |
- |
| MYC76 |
Komárom |
2013 |
Nasal swab |
KJ438255 |
KJ438192 |
KJ438213 |
KJ438234 |
- |
1.8 |
3.3 |
4.8 |
- |
8.0 |
1.2 |
4.0 |
- |
| MYC77 |
Kertészsziget |
2010 |
Lung |
KJ438256 |
KJ438193 |
KJ438214 |
KJ438235 |
2.2 |
0.8 |
3.3 |
- |
3.0 |
11.0 |
0.6 |
3.0 |
2.4 |
| MYC78 |
Hosszúpályi |
2011 |
Lung |
KF926468 |
KF926469 |
KF926470 |
KF926471 |
- |
0.8 |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC79 |
Hosszúpályi |
2011 |
Lung |
KJ438257 |
KJ438194 |
KJ438215 |
KJ438236 |
- |
0.8 |
3.3 |
5.8 |
3.0 |
8.0 |
1.2 |
4.0 |
2.4 |
| MYC80 | Ebes | 2011 | Lymphnode | KF926472 | KF926473 | KF926474 | KF926475 | 2.2 | 0.8 | 3.3 | - | - | 25.0 | 1.2 | 4.0 | 2.4 |
Herd of origin, date, sample type, GenBank Accession numbers of locus sequences and number of TRs of the thirty-one M. bovis strains analyzed in this study.