Table 3.
Simulation results of the evolutionary model
| vp4 gene | vp6 gene | vp7 gene | |||
|---|---|---|---|---|---|
| Model selected: | HKY + G | GTR + G | HKY + G | TVMef + G | K80 + G |
| -lnL = | 10960.6680 | 10947.8525 | 10486.8574 | 10480.6113 | 6139.4121 |
| K = | 5 | 9 | 5 | 8 | 2 |
| AIC = | 21913.7051 | 20977.2227 | |||
| Base frequencies: | |||||
| freqA = | 0.2726 | 0.2724 | 0.2561 | 0.2530 | |
| freqC = | 0.2541 | 0.2476 | 0.2612 | 0.2586 | |
| freqG = | 0.2361 | 0.2401 | 0.2285 | 0.2313 | |
| freqT = | 0.2371 | 0.2400 | 0.2541 | 0.2571 | |
| Substitution model: | |||||
| R(a) [A-C] = | 1.9847 | 1.8471 | |||
| R(b) [A-G] = | 3.8446 | 7.0961 | |||
| R(c) [A-T] = | 1.3223 | 1.3157 | |||
| R(d) [C-G] = | 1.7384 | 1.3664 | |||
| R(e) [C-T] = | 4.4150 | 7.0961 | |||
| R(f) [G-T] = | 1.0000 | 1.0000 | |||
| i/tv ratio = | 1.3563 | 2.5439 | |||
| Proportion of invariable | |||||
| sites = | 0 | 0 | 0 | 0 | 0 |
| Gamma distribution | |||||
| shape parameter = | 4.2112 | 4.3849 | 3.8529 | 3.7611 | 3.8868 |