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. 2014 Apr 23;14:87. doi: 10.1186/1471-2148-14-87

Table 1.

2 × 2 contingency table for one particular gene in E. coli

  Conserved sites Non-conserved sites
Structurally sensitive
3
10
Structurally non-sensitive 4 57

Note - The odds ratio of conservation pattern between structurally disruptive and non-disruptive sites is (3/10)/(4/57) = 4.28. Because there is one contingency table per gene, we applied the Mantel-Haenszel test to compute the joint odds ratio across all genes.