Table 2.
Nucleotide diversity of Avr and control genes
|
Avr
-genes |
Control loci |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Avr-Pita1 (817 bp)
|
PWL2 903 bp
|
Avr-Pik 1371 bp
|
Avr-Pii 213 bp
|
ACE1 2193
|
CHS1 925 bp
|
ITS 771 bp
|
Others |
|||||
| Non-coding 250 bp | CDS 567 bp | Non-coding 465 | CDS 438 bp | Non-coding 1029 bp | CDS 342 bp | CDS 213 bp | Non-coding 87 bp | CDS 2106 bp | CDS 925 bp | All region | All region | |
| JS |
0 |
0.002 |
0 |
0.001 |
0.001 |
0.004 |
/ |
0 |
0 |
0 |
0.0008 |
0 |
| GD |
0 |
0.001 |
0.002 |
0 |
0.001 |
0.003 |
/ |
0.0035 |
0.003 |
0.001 |
0.0005 |
0 |
| SC |
0.002 |
0.006 |
0.001 |
0.001 |
0.001 |
0.005 |
0.0003 |
0.0021 |
0.002 |
0.001 |
0.0012 |
0 |
| YN |
0 |
0 |
0.001 |
0 |
0 |
0.004 |
/ |
0 |
0 |
0 |
0.0002 |
0 |
| All sequences | 0.002 | 0.005 | 0.001 | 0.001 | 0.001 | 0.005 | 0.0003 | 0.001 | 0.001 | 0.001 | 0.0012 | 0 |
ITS isn’t a protein coding gene and doesn’t have a CDS sequence. The bold style reflects that the diversity of CDS region is significantly larger than that of non-coding region.