Table 1.
Selected predicted target genes of bantam in the down-regulated genes in 23DSI
| Gene | RawIntensity-23SSI | RawIntensity-23DSI | log2 Ratio(23DSI/23SSI) | P-Value | FDR | GO Component | GO Function | GO Process |
|---|---|---|---|---|---|---|---|---|
| Sjc_0013630|Sjp_0013630|SJC_S000059.548289 |
3987 |
208 |
−4.25 |
0 |
0 |
- |
- |
gi|257206034|emb|CAX82668.1|/1.09956e-27/Troponin T |
| Sjc_0007940|Sjp_0007940|SJC_S000025.694320 |
3316 |
400 |
−3.04 |
0 |
0 |
GO:0004175//endopeptidase activity |
GO:0019222//regulation of metabolic process;GO:0019538//protein metabolic process |
gi|30995341|gb|AAO59414.2|/0/cathepsin B endopeptidase |
| Sjc_0018120|Sjp_0018120|SJC_S000088.269899 |
3165 |
1412 |
−1.15 |
0 |
0 |
GO:0005488//binding;GO:0005198//structural molecule activity |
GO:0007052//mitotic spindle organization;GO:0010467//gene expression |
gi|226489394|emb|CAX75841.1|/1.27333e-22/Ribosomal protein L11 |
| Sjc_0083460|Sjp_0083460|SJC_S001708.6042 |
2501 |
328 |
−2.92 |
0 |
0 |
GO:0016740//transferase activity |
GO:0009987//cellular process;GO:0009790//embryo development |
gi|308507601|ref|XP_003115984.1|/0/hypothetical protein CRE_08793 |
| Sjc_0112990|Sjp_0112990|SJC_S007878.4178 |
1851 |
267 |
−2.78 |
0 |
0 |
GO:0004175//endopeptidase activity |
GO:0019538//protein metabolic process |
gi|56753605|gb|AAW25005.1|/3.77535e-176/SJCHGC02852 protein |
| Sjc_0031630|Sjp_0031630|SJC_S000203.86734 |
1450 |
109 |
−3.72 |
0 |
0 |
GO:0016832//aldehyde-lyase activity |
GO:0006007//glucose catabolic process |
gi|226475766|emb|CAX71973.1|/0/Aldolase |
| Sjc_0068090|Sjp_0068090|SJC_S000902.40949 |
1040 |
445 |
−1.21 |
0 |
0 |
GO:0016857//racemase and epimerase activity, acting on carbohydrates and derivatives;GO:0048037//cofactor binding |
GO:0016070//RNA metabolic process;GO:0006915//apoptosis;GO:0019318//hexose metabolic process;GO:0010467//gene expression;GO:0051028//mRNA transport |
gi|226487130|emb|CAX75430.1|/0/putative UDP-galactose-4-epimerase |
| Sjc_0038080|Sjp_0038080|SJC_S000276.119101 |
985 |
321 |
−1.6 |
0 |
0 |
GO:0016670//oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
GO:0008152//metabolic process |
gi|76156276|gb|AAX27495.2|/0/SJCHGC06250 protein |
| Sjc_0006800|Sjp_0006800|SJC_S000021.979701 |
935 |
434 |
−1.09 |
0 |
0 |
GO:0004175//endopeptidase activity |
GO:0019538//protein metabolic process |
gi|226476888|emb|CAX72314.1|/0/cathepsin D (lysosomal aspartyl protease) |
| Sjc_0103990|Sjp_0103990|SJC_S004191.40055 |
664 |
260 |
−1.34 |
0 |
0 |
- |
- |
gi|256090158|ref|XP_002581079.1|/0/eukaryotic translation initiation factor 2c |
| Sjc_0044670|Sjp_0044670|SJC_S000376.73872 |
583 |
146 |
−1.98 |
0 |
0 |
GO:0005515//protein binding;GO:0000166//nucleotide binding |
GO:0009790//embryo development;GO:0002119//nematode larval development;GO:0010259//multicellular organismal aging;GO:0045137//development of primary sexual characteristics |
gi|226469288|emb|CAX70123.1|/1.05716e-112/heat shock protein 90 kDa alpha |
| Sjc_0092310|Sjp_0092310|SJC_S002488.15565 |
574 |
11 |
−5.69 |
0 |
0 |
GO:0005488//binding |
GO:0006412//translation |
gi|238658344|emb|CAZ29402.1|/0/expressed protein |
| Sjc_0060730|Sjp_0060730|SJC_S000689.17829 |
490 |
26 |
−4.22 |
0 |
0 |
GO:0015175//neutral amino acid transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity |
GO:0015804//neutral amino acid transport |
gi|226468260|emb|CAX69807.1|/0/solute carrier family 6 (neurotransmitter transporter, glycine) |
| Sjc_0087030|Sjp_0087030|SJC_S001927.503 |
447 |
75 |
−2.56 |
0 |
0 |
GO:0005488//binding;GO:0016301//kinase activity |
GO:0009987//cellular process |
gi|226487670|emb|CAX74705.1|/0/putative Elongation factor 2 kinase (eEF-2 kinase) |
| Sjc_0053950|Sjp_0053950|SJC_S000536.83029 |
331 |
19 |
−4.11 |
0 |
0 |
GO:0005488//binding;GO:0003712//transcription cofactor activity |
GO:0050896//response to stimulus;GO:0006355//regulation of transcription, DNA-dependent;GO:0023052//signaling |
gi|56753834|gb|AAW25114.1|/9.32058e-50/SJCHGC01061 protein |
| Sjc_0094720|Sjp_0094720|SJC_S002677.1428 |
304 |
12 |
−4.65 |
0 |
0 |
- |
GO:0006643//membrane lipid metabolic process |
gi|56758970|gb|AAW27625.1|/0/SJCHGC01869 protein |
| Sjc_0101270|Sjp_0101270|SJC_S003878.693 | 100 | 12 | −3.05 | 0 | 0 | GO:0016868//intramolecular transferase activity, phosphotransferases | GO:0006006//glucose metabolic process | gi|257206128|emb|CAX82715.1|/2.08691e-122/putative phosphoglucomutase 2 |