Table 2.
Summary of the HGF promoter sequencing
Patient no. | SNP (NCBI dbSNP) | INDEL mutation | NCBI dbSNP | DATE length | Sequence region | HGF Serum levels |
---|---|---|---|---|---|---|
MM 4 |
−1652C/T |
– |
Rs3735520 |
27 |
−2920 – +120 |
High |
MM 5 |
−2142C/A |
– |
Rs11763015 |
26 |
−2870 – +120 |
High |
−1652C/T |
Rs3735520 |
|||||
MM 7 |
−2142C/A |
– |
Rs11763015 |
22 |
−2910 – -20 |
High |
−1652C/T |
Rs3735520 |
|||||
MM 14 |
2309 T/A* |
– |
Rs149178895* |
29 |
−2920 – +120 |
High |
−1652C/T |
Rs3735520 |
|||||
MM 22 |
– |
– |
|
15 |
−2280 – +120 |
High |
MM 24 |
– |
– |
Rs3735520 |
28 |
−2870 – +120 |
High |
−1652C/T | ||||||
MM 29 |
−1652C/T |
– |
Rs3735520 |
27 |
−2870 – +120 |
High |
MM 3 |
−1652C/T |
– |
Rs3735520 |
22 |
−2870 – +120 |
Low |
MM 12 |
−2142C/A |
– |
Rs11763015 |
22 |
−2840 – -1710 |
Low |
MM 16 |
−1652C/T |
– |
Rs3735520 |
23 |
−2810 – +120 |
Low |
MM 17 |
−1652C/T |
– |
Rs3735520 |
26 |
−2730 – +120 |
Low |
MM 23 |
−2142C/A |
– |
Rs11763015 |
25 |
−2870 – +120 |
Low |
−1652C/T | Rs3735520 |
Genomic DNA isolates from CD138+ cells were used to amplify segments of the HGF promoter. PCR products were pre-treated with exonuclease I and shrimp alkaline phosphatase and directly used for Sanger DNA sequencing. RefSeq gene NG_016274 was used as reference sequence. SNP and sequence region are relative to transcription start site.
SNP positions Rs3735520 and Rs11763015 are depicted relative to transcription start site (NM_000601.4:c).
*SNP position RS149178895 is depicted relative to gene region NG_016274.1.