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. 2014 Apr 9;2:8. doi: 10.1186/2050-7771-2-8

Table 2.

Summary of the HGF promoter sequencing

Patient no. SNP (NCBI dbSNP) INDEL mutation NCBI dbSNP DATE length Sequence region HGF Serum levels
MM 4
−1652C/T

Rs3735520
27
−2920 – +120
High
MM 5
−2142C/A

Rs11763015
26
−2870 – +120
High
−1652C/T
Rs3735520
MM 7
−2142C/A

Rs11763015
22
−2910 – -20
High
−1652C/T
Rs3735520
MM 14
2309 T/A*

Rs149178895*
29
−2920 – +120
High
−1652C/T
Rs3735520
MM 22


 
15
−2280 – +120
High
MM 24


Rs3735520
28
−2870 – +120
High
−1652C/T
MM 29
−1652C/T

Rs3735520
27
−2870 – +120
High
MM 3
−1652C/T

Rs3735520
22
−2870 – +120
Low
MM 12
−2142C/A

Rs11763015
22
−2840 – -1710
Low
MM 16
−1652C/T

Rs3735520
23
−2810 – +120
Low
MM 17
−1652C/T

Rs3735520
26
−2730 – +120
Low
MM 23
−2142C/A

Rs11763015
25
−2870 – +120
Low
  −1652C/T   Rs3735520      

Genomic DNA isolates from CD138+ cells were used to amplify segments of the HGF promoter. PCR products were pre-treated with exonuclease I and shrimp alkaline phosphatase and directly used for Sanger DNA sequencing. RefSeq gene NG_016274 was used as reference sequence. SNP and sequence region are relative to transcription start site.

SNP positions Rs3735520 and Rs11763015 are depicted relative to transcription start site (NM_000601.4:c).

*SNP position RS149178895 is depicted relative to gene region NG_016274.1.