Table 2.
Genes encoding surface proteins differentially transcribed in ISE6 culture v. blood
| Genome ID | Functional annotation | Fold change ISE6/Blood | ISE6 RPKM | Blood RPKM |
|---|---|---|---|---|
| AM778 |
Outer membrane protein |
9.8 |
4221.0 |
430.2 |
| AM090 |
MSP4 |
6.7 |
5950.9 |
891.8 |
| AM956 |
Cytosol aminopeptidase; pepA |
6.6 |
1827.0 |
275.6 |
| AM854 |
Putative peptidoglycan-associated lipoprotein |
5.0 |
2672.7 |
532.8 |
| AM097 |
VirB9-1 |
4.4 |
1925.6 |
434.9 |
| AM197 |
Undefined product |
3.9 |
54.9 |
14.2 |
| AM1166 |
OMP5 |
3.8 |
828.7 |
216.5 |
| AM560 |
Putative cell-surface protein |
3.5 |
787.4 |
226.7 |
| AM1142 |
OpAG2 |
-3.5 |
516.0 |
1827.0 |
| AM123 |
MSP1b2 |
-3.6 |
90.7 |
330.6 |
| AM1140 |
OpAG3 |
-4.0 |
434.0 |
1727.4 |
| AM573 |
Paralog of AM560 |
-4.2 |
13.5 |
56.5 |
| AM878 |
AAAP |
-4.4 |
21.6 |
95.9 |
| AM1315 |
VirB9-2 |
-4.7 |
898.2 |
4221.0 |
| AM779 |
Outer membrane protein |
-4.8 |
317.5 |
1533.7 |
| AM532 |
MLP2 |
-4.9 |
78.7 |
386.4 |
| AM535 |
MLP3 |
-5.1 |
31.6 |
162.4 |
| AM127 |
Undefined product |
-5.2 |
134.1 |
692.9 |
| AM1159 |
OMP3 |
-5.4 |
23.9 |
128.6 |
| AM1314 |
virB10 |
-5.4 |
698.9 |
3795.2 |
| AM529 |
Undefined product |
-5.5 |
301.3 |
1648.1 |
| AM1164 |
OMP4 |
-5.5 |
37.9 |
207.7 |
| AM987 |
OMP15 |
-5.6 |
14.2 |
79.4 |
| AM1220 |
OMP7 |
-6.3 |
309.9 |
1960.9 |
| AM188 |
Partial gene of msp1b gene family; msp1Bpg1 |
-6.5 |
7.3 |
47.0 |
| AM1222 |
OMP9 |
-7.0 |
532.2 |
3703.0 |
| AM1258 |
OMP13 |
-7.1 |
155.7 |
1110.2 |
| AM1143 |
OpAG1 |
-7.6 |
268.9 |
2040.0 |
| AM1221 |
OMP8 |
-7.8 |
377.6 |
2929.1 |
| AM387 |
Undefined product |
-8.6 |
210.2 |
1809.7 |
| AM1219 |
OMP6 |
-22.1 |
79.4 |
1753.8 |
| AM180 |
MSP1b1 |
-35.1 |
138.4 |
4857.2 |
| AM366 |
Undefined product |
-46.9 |
23.2 |
1085.6 |
| AM1063 | MSP3 | -55.2 | 162.8 | 8984.4 |