Table 1. Variants detected by whole genome re-sequencing of an affected Kromfohrländer.

Filtering step	Number of variants
Variants in the whole genomea	3,528,020
Variants in the critical 611 kb interval on CFA 5	1,314
Variants in the critical interval that were absent from 46 other dog genomes	2
Non-synonymous variants in the whole genomea	11,437
Non-synonymous variants in the critical 611 kb interval on CFA 5	16
Non-synonymous variants in the critical interval that were absent from 46 other dog genomes	1

^aThe sequences were compared to the reference genome (CanFam 3.1) from a Boxer. Only variants that were homozygous in the affected Kromfohrländer are reported.