Table 1. List of genes differentially-expressed in aged (Day 3) yeast by genetic Meth-R, dependent on the retrograde response.
| ABF1 | HOM6 | RTC2 | YIM1 | EXG2 | NMA1 | URA1 |
| ACO2 | HSP32 | SDT1 | YIR042C | EXO1 | OPT2 | YAR028W |
| ACS1 | HSP33 | SEO1 | YJL132W | FCY1 | OST4 | YAR029W |
| ADP1 | SNO4 | SHH3 | YKL069W | FCY21 | PAM18 | YBR016W |
| ADY2 | HUL4 | SHH4 | YLR143W | FCY22 | PIN3 | YCL021W-A |
| AIM19 | ICS2 | SIR3 | YLR154W-E | FDH1 | PIS1 | YCR043C |
| ALO1 | ILM1 | SNF1 | YLR241W | FRE3 | PLB3 | YDL012C |
| APL3 | IML1 | SNO2 | YLR346C | FRT1 | PMA1 | YDR210W |
| AQY1 | INP54 | SNO3 | YMR084W | GAS1 | PMU1 | YDR222W |
| ARG3 | KAP123 | SNT309 | YNL146W | GAS2 | PRM10 | YER163C |
| ARG5,6 | KEL1 | SNZ2 | YPL109C | GAS3 | PTP2 | YGR035C |
| ARO10 | KNH1 | SNZ3 | YPL113C | GAS4 | PUF3 | YGR079W |
| BDS1 | KXD1 | SPE3 | ZPS1 | GIC2 | PUG1 | YIP3 |
| BLM10 | LYS9 | SPL2 | ZRG17 | GND1 | QDR2 | YIR018C-A |
| BOP2 | MCH2 | SPO14 | ADH6 | HAC1 | RAD51 | YJL171C |
| COG1 | MCX1 | SPO19 | ADK2 | HBN1 | RFS1 | YLR040C |
| COG8 | MDS3 | SPS100 | ALR2 | HDA1 | RFX1 | YLR157W-E |
| CRC1 | MET5 | STP4 | APJ1 | HEM13 | RGI1 | YLR159W |
| CRF1 | NCA2 | SUL1 | ARE2 | HMLALPHA2 | RGS2 | YLR177W |
| CSI1 | NDE2 | TAT1 | ASK1 | HMRA2 | RIM8 | YLR194C |
| DER1 | NTA1 | TCB1 | ASP3-1 | MATALPHA2 | RNR1 | YLR342W-A |
| DFR1 | NUT1 | THI4 | ASP3-2 | HOG1 | ROG3 | YML119W |
| DIS3 | OPT1 | TRR2 | ASP3-3 | HXT4 | ROX1 | YMR122W-A |
| DPP1 | OSH2 | UBA1 | ASP3-4 | IMD4 | RPS9A | YMR265C |
| DUF1 | PAU17 | UBC12 | BTN2 | IZH3 | RSB1 | YMR295C |
| ECL1 | PCL6 | VBA3 | BUD23 | KTI11 | SCS7 | YNL155W |
| ECM1 | PDC6 | VBA5 | CAR1 | LIP5 | SCW10 | YNL234W |
| ECM4 | PEP5 | VPS13 | CDC3 | LSB1 | SFK1 | YNR014W |
| EMC2 | PGK1 | VPS15 | CHS1 | MAL12 | SFM1 | YOL014W |
| EMI5 | PHO84 | VPS30 | CIN5 | MAL32 | SMP1 | YOL036W |
| ENV11 | PKP2 | VPS33 | CIS3 | MCA1 | SOH1 | YOR338W |
| ERG24 | PMA2 | VPS55 | CLA4 | MCM1 | SPI1 | YOR378W |
| ERR1 | PPH22 | WTM1 | COA2 | MDM30 | SPT15 | YOR389W |
| ERR2 | PRE1 | XYL2 | COX23 | MEP2 | SSL2 | YPC1 |
| ERR3 | PRE3 | YBL029W | CPR6 | MF(ALPHA)1 | STE3 | YPK2 |
| ESC8 | PTC5 | YBL039W-B | CTR1 | MGA1 | STP3 | YPL014W |
| ETR1 | PUT4 | YBP1 | CYC7 | MIC17 | STS1 | YPP1 |
| EUG1 | QRI7 | YBR285W | DAL3 | MID2 | SUN4 | YPR153W |
| FMP27 | RAS1 | YBT1 | DED1 | MIG2 | TIM17 | YPS3 |
| FMP45 | RAV1 | YDL218W | DIF1 | MIM2 | TOS1 | YPS7 |
| GPI13 | RFC1 | YFL042C | DOG2 | MMT1 | TOS3 | YSR3 |
| GPM2 | RNR2 | YGL242C | DOT6 | MND1 | TPO4 | YSY6 |
| GRE1 | ROT2 | YGR026W | DUR3 | MPH2 | UBP9 | |
| GTO1 | RPI1 | YHR022C | EHT1 | MPS2 | UGA4 | |
| HBT1 | RPN7 | YIL001W | ERG4 | MRS3 | UPS2 | |
| HES1 | RRI2 | YIL029C | ESA1 | MVD1 | UPS3 |
Genes indicated in bold are upregulated; all other genes are downregulated. Underlining of adjacent gene names indicates cases where probes are incapable of discriminating between highly similar genes. For all probe set IDs for which gene names are unavailable, systematic names are given.