Table 5.
Comparison of published genotypes and associated phenotypes with GVs detected in this study
| Genes impacted |
Published data |
Our genomic analysis |
||||
|---|---|---|---|---|---|---|
| Genotype (GVs) | Phenotype (Trait) | Reference | Result in our dataset | Coordinates | Observations | |
|
npr-1 |
SNV;G > T;V215F |
Intake of CO2/O2; Social behavior and food response; Pathogen susceptibilty |
[29,36,38] |
Found |
X:4768758 |
N.A. |
|
glb-5 |
Deleted 5th exon |
Intake of CO2/O2 |
[29,30] |
Found after inspection |
V:5562441..5562810 |
NAHR-based deletion |
|
plg-1 (no gene model associated) |
Deletion of LTR-Retrotransposon (retr-1; F44E2.2) |
Copulatory plug formation |
[28] |
Found after inspection |
III:8852505..8861364 |
Repeat at boundary |
| C49G7.1, D1065.3 |
2.9 kbp deletion |
N.R. |
[48] |
Found |
V:4057628..4060567 |
N.A. |
|
gst-38 |
Multiple SNVs |
N.R. |
[48,50] |
Found |
V:15915782, 15915630, 15915570, 15915519, 15915351, 15915441, 15915316, 15915620, 15915480, 15915498, 15915561, 15915489, 15915347, 15915780, 15915777, 15915687, 15915318, 15915672, 15915666, 15915284, 15915393, 15915624, 15915837, 15915879, 15915417, 15915387, 15915439 |
N.A. |
|
tra-3 |
SNV;T > C;F96L |
Temperature-size rule |
[32] |
Found |
IV:14442336 |
N.A. |
|
ppw-1 |
SNV;T > C;F35S |
Germline RNAi |
[33] |
Found |
I:4186589 |
N.A. |
| Insertion;ATT |
Found after inspection |
I:4186704..4186705 |
N.A. |
|||
| SNV;A > G;T245A |
Found |
I:4187463 |
N.A. |
|||
| Deletion;C |
Found |
I:4187632 |
N.A. |
|||
| SNV;C > T;L474L |
Found |
I:4188304 |
N.A. |
|||
| SNV;A > G;D691G |
Found |
I:4189045 |
N.A. |
|||
| SNV;A > G;K777E |
Found after inspection |
I:4189302 |
Falls in non-unique region |
|||
|
tyra-3 |
184 bps deletion |
Patch-leaving |
[81] |
Found |
X:4948657..4948841 |
Non-coding region |
| zeel-1 | High divergence, 19 kb deletion | Required for compatibility between N2 and CB4856 | [26] | Not found | N.A. | Divergent, complex region |