Table 1.
Summary of RNA-seq datasets
| Soybean line | Jack | FAM94-41 | M23 | N0304-303-3 | R02-6268 F | R05-4256 | R05-591 | R08-1450 | R95-1705 | Total | Average |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total no. of sequenced reads (in million) |
31.2 |
37.3 |
38.7 |
31.1 |
45.3 |
28.1 |
35.1 |
35.1 |
29.3 |
311.2 |
34.6 |
| No. of reads aligned uniquely (in million) |
20.6 |
25.9 |
25.1 |
19.9 |
31.7 |
17.1 |
23.3 |
25.2 |
19.8 |
208.6 |
23.2 |
| Percent reads aligned uniquely |
66.1 |
69.5 |
64.9 |
63.9 |
70.0 |
61.0 |
66.6 |
71.7 |
67.7 |
- |
66.8 |
| Total length of transcripts covered (in million nt) |
63.5 |
76.4 |
70.2 |
65.1 |
80.8 |
66.3 |
77.4 |
75.9 |
72.5 |
130.5 |
72.0 |
| Total length of annotated transcripts covered (in million nt) |
49.7 |
54.7 |
53.0 |
49.7 |
57.2 |
49.9 |
55.4 |
52.0 |
52.0 |
69.7 |
52.6 |
| Average depth of coverage per transcript nt |
20.0 |
20.8 |
19.7 |
19.8 |
24.7 |
17.9 |
19.3 |
24.8 |
19.1 |
- |
20.7 |
| Average depth of coverage per annotated transcript nt |
24.6 |
27.7 |
25.1 |
24.9 |
33.4 |
22.7 |
25.7 |
34.4 |
25.4 |
- |
27.1 |
| No. of genes identified (in thousand) |
33.3 |
33.3 |
33.4 |
33.3 |
33.4 |
33.3 |
33.4 |
33.0 |
33.3 |
33.8 |
33.3 |
| No. of annotated genes identified (in thousand) | 32.6 | 32.6 | 32.6 | 32.6 | 32.7 | 32.5 | 32.6 | 32.2 | 32.5 | 32.9 | 32.5 |