Table 6.
SNPs in putative acyl lipid genes
| Soybean line | Jack | FAM94-41 | M23 | N0304-303-3 | R02-6268 F | R05-4256 | R05-591 | R08-1450 | R95-1705 | Total | Average |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total SNP count in annotated genes |
414 |
668 |
615 |
618 |
633 |
427 |
467 |
722 |
578 |
1186 |
571.33 |
| SNPs in annotated exons |
379 |
585 |
550 |
548 |
553 |
392 |
413 |
625 |
501 |
1012 |
505.11 |
| SNPs in annotated UTRs |
112 |
188 |
162 |
164 |
177 |
127 |
142 |
192 |
168 |
304 |
159.11 |
| SNPs in annotated CDS |
267 |
397 |
388 |
384 |
376 |
265 |
271 |
433 |
333 |
708 |
346.00 |
| Non-synonymous SNPs |
111 |
157 |
156 |
149 |
155 |
100 |
99 |
172 |
146 |
280 |
138.33 |
| Synonymous SNPs |
156 |
240 |
232 |
235 |
221 |
165 |
172 |
261 |
187 |
428 |
207.67 |
| SNPs eliminating start codons |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0.20 |
| SNPs causing premature termination codons |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
0.89 |
| SNPs eliminating termination codons |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.00 |
| SNPs in splice sites |
1 |
3 |
2 |
2 |
3 |
1 |
0 |
2 |
2 |
5 |
1.78 |
| SNPs in annotated introns |
56 |
114 |
88 |
96 |
98 |
58 |
81 |
126 |
103 |
174 |
91.11 |
| SNPs overlapping with dbSNP | 355 | 552 | 524 | 514 | 545 | 363 | 393 | 614 | 489 | 998 | 483.22 |