Table 7.
INDEL annotation
| Soybean line | Jack | FAM94-41 | M23 | N0304-303-3 | R02-6268 F | R05-4256 | R05-591 | R08-1450 | R95-1705 | Total | Average |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total INDEL count in annotated genes |
660 |
1096 |
935 |
985 |
1115 |
803 |
891 |
1106 |
975 |
1693 |
951.78 |
| INDELs in annotated exons |
553 |
926 |
801 |
838 |
933 |
673 |
742 |
921 |
801 |
1365 |
798.67 |
| INDELs in annotated UTRs |
419 |
728 |
635 |
674 |
743 |
520 |
564 |
739 |
634 |
1124 |
628.44 |
| INDELs in annotated CDS |
134 |
198 |
166 |
164 |
190 |
153 |
178 |
182 |
167 |
241 |
170.22 |
| INDELs in termination codons |
2 |
3 |
3 |
3 |
2 |
1 |
3 |
3 |
3 |
4 |
2.56 |
| INDELs in splice sites |
16 |
33 |
26 |
30 |
29 |
20 |
29 |
25 |
25 |
35 |
25.89 |
| INDELs in annotated introns |
140 |
221 |
179 |
192 |
233 |
166 |
195 |
238 |
220 |
328 |
198.22 |
| INDELs overlapping with dbSNP | 243 | 365 | 335 | 341 | 380 | 298 | 326 | 409 | 345 | 578 | 338.00 |