TABLE 2.
Virulence-associated and metabolic gene contents of Klebsiella sp. strain 10982 in comparison with other sequenced genomes
| Description | Gene(s) | GenBank accession no. |
K. variicola straina |
Klebsiella sp. strain 10982 |
K. pneumoniae strain |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 342 | At-22 | K1_1_55 | NTUH-K2044 | MGH 78578 | 1162281 | JH1 | MS 92-3 | 1191100241 | ATCC 13884 | KCTC 2242 | ||||
| Metabolic | ||||||||||||||
| Nitrogen fixation | nifQ to nifJ | YP_002237547.1 to YP_002237566.1 | + | + | + | + | − | − | − | − | − | − | − | − |
| Nitrogen assimilation from allantoinb | allS to arc | YP_002918199.1 to YP_002918216.1 | − | − | − | + | + | − | − | − | − | − | − | − |
| Citrate fermentationb | citB to citG2 | YP_001333718.1 to YP_001333728.1 | + | + | +/− | + | +/− | + | − | − | +/− | + | − | + |
| Virulence-associated | ||||||||||||||
| Iron acquisition | iroN, iroB, iroC, iroD | BAF49477.1 to BAF49480.1 | − | − | − | − | + | − | − | − | + | − | + | − |
| Virulence-associated | vagC, vagD | BAF49474.1, BAF49475.1 | − | − | − | − | + | − | − | − | + | − | + | − |
| Capsular polysaccharide synthesis, mucoid phenotype | rmpA | YP_001687850.1 | − | − | − | − | + | − | − | − | − | − | + | + |
| Serum resistance | magA | BAC76772.1 | − | − | − | − | + | − | − | − | − | − | − | − |
| Iron acquisition | kfu | BAH62695.1 | + | + | + | + | + | + | + | + | + | + | + | + |
| Capsule production | uge/wcaG | AAP68521.1 | + | + | + | + | + | + | + | + | + | + | + | + |
| Capsule production | wabG | AAX20104.1 | + | + | + | + | + | + | + | + | + | + | + | + |
| Urease | ureA | ABR78861.1 | + | + | + | + | + | + | + | + | + | + | + | + |
| Type 1 fimbrial adhesin | fimH | AAA25091.1 | + | + | + | + | + | + | + | + | + | + | + | + |
a
+, BSR value of ≥0.8 determined by TBLASTN analysis of the amino acid sequences encoded by each gene; +/−, BSR value of ≥0.8 for one or a few of the amino acid sequences encoded by genes within this region.
b
Also associated with virulence.