Table 2.

Mapping efficiencies, CpG coverage and average genome-wide methylation levels resulting from reduced representation bisulfite sequencing (RRBS) and whole genome bisulfite sequencing (WGBS) libraries.

Method	% Mapping	Sequence reads	Total no. CpGs	CpGs with ≥ 10x coverage	% Methylated CpGs
RRBS	52.3	119,518,539	2,599,828	1,765,542	53.5
WGBS	42.2	131,960,496	9,719,824	2,840,025	64.9

Both library types were sequenced over one lane on an Illumina HiSeq 2000.