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. 2014 May 6;14:115. doi: 10.1186/1471-2180-14-115

Table 3.

List of primers for this study

Primer name Sequences (5′-3′)
Mutant construction
 
BsaM up for
AAGCTTCACGCGACGCGATTTTGAATTG
BsaM up rev
AAGCTTGCTCGCCGACGCAGAAAAATA
BsaM dn for
GAATTCAAGCTTGATCACGCGTCCTGGTATTT
BsaM dn rev
TTGGATCCAAGCGAGACGTAGATGCTG
BopA up for
CCAAGCTTGCATGCCTGCAGGTCTTGCTCTCGGTTGAAGG
BopA up rev
GAGGATCCCCGGGTATGCATCGACATTGATCATCC
BopA dn for
TACCCGGGGATCCTCGCATGAAGAACGCATGAAGA
BopA dn rev
CCATGATTACGAATTCGATTCTTGTTGCTCCGATGC
BopC up for
CCATGATTACGAATTCCCCGACCAGTTGAAGATGTC
BopC up rev
GAGGATCCCCGGGTAGAACCAATGCCTAGCCTCAC
BopC dn for
TACCCGGGGATCCTCCTGGGGTCGGTTTACATACG
BopC dn rev
CCAAGCTTGCATGCCTGCAGGAGCATCGCGAATACGAACT
BopE up for
CGGTACCCGGGGATCCAACAACCGCTCCTTCATCC
BopE up rev
TCATGTCTTGCTCTCGGTTG
BopE dn for
GAGAGCAAGACATGAGACGCTCGAAGCCACATAC
BopE dn rev
GGCCAGTGCCAAGCTTGTATTACGAGTCGGGGCTGA
Bt BsaM up for
GGCCAGTGCCAAGCTTTTTCCAGAAAAGCGAGCAAT
Bt BsaM up rev
GGCGATAAATGGCCTGATTA
Bt BsaM dn for
AGGCCATTTATCGCCGATCACGCGTCCTGGTATTT
Bt BsaM dn rev
CGGTACCCGGGGATCCAGCAGCGAGAAAGAAACGAA
Expression in mammalian cells
 
BopA for
GAGGAGTGGATGATCAATGTCG
BopA rev
GTTCTTCATGCTGTCTTCAGGC
BopC for
AAGCTTAAGATGCCGAGCATGACC
BopC rev
GGATCCTCATGCGAGTGGGGTGTC
Real-Time PCR
 
BopA RT for
TTCGTGCTGTTCGGGCTGA
BopA RT rev
TCGATACTTGAGCTCGCCTGACTT
BopC RT for
TACCGACGATCTCGTCAAAG
BopC RT rev
GCGTTCAAGGAAGTTAAGCC
BopE RT for
TCCTTCGCTTCGCTGAAGATCG [18]
BopE RT rev
ATTCGGCCGGCAAGTCTACG [18]
GAPDH for
CAATGACCCCTTCATTGACC [44]
GAPDH rev GTTCACACCCATGACGAACATG [44]