Table 1. Frequency of 3′ UTR reporter repression for artificial miRNAs with and without seed matches in the reporter.
Reporter | Artificial miRNA seed match in reporter | No artificial miRNA seed match in reporter | P value, Fisher's test | ||||
---|---|---|---|---|---|---|---|
Reporter repressed | Reporter not repressed | % Reporter repressed | Reporter repressed | Reporter not repressed | % Reporter repressed | ||
PC | 78 | 151 | 34.1% | 10 | 69 | 12.7% | 0.00026 |
GLS | 58 | 142 | 29.0% | 18 | 90 | 16.7% | 0.01849 |
GAPDH | 7 | 27 | 20.6% | 20 | 254 | 7.3% | 0.01870 |
EMPTY | 8 | 300 | 2.6% |
For each 3′ UTR reporter indicated, the artificial miRNAs were classified by whether they had a seed match in the reporter and whether the reporter luciferase activity was significantly repressed by the miRNA (activity > 2 SD below the reporter alone mean and q < 0.05). The significance of the association between seed matches and reporter repression for each 3′ UTR reporter was calculated using Fisher's exact test.