Table 1.
Read counts
| Sample | Total reads (cleaned*) | Reads aligned to Emihu1plus** | Reads mapped to transcripts |
|---|---|---|---|
| 2BE |
79,031,642 |
51,787,959 (66%) |
65,282,968 (83%) |
| 4BE |
70,232,202 |
44,631,230 (64%) |
57,466,155 (82%) |
| 6BE |
71,097,330 |
44,755,528 (63%) |
57,685,982 (81%) |
| 8BE |
84,292,692 |
50,341,359 (60%) |
64,839,232 (77%) |
| 10BE |
30,393,401 |
3,559,270 (12%) |
6,042,025 (20%) |
| 12BE | 74,680,032 | 44,832,848 (60%) | 58,182,177 (78%) |
*After removing adaptors and trimming to 90 bp (removed 15million reads in 10BE and up to 5 million in the other samples) **Each sequence was counted once even if several reads have the same sequence, each sequence aligned to the genome ~2-2.5 times in average (for 10BE, 4 times). Percentage of cleaned reads in parentheses.