Table 2.
Evaluation of enlarged “gold standard” gene set
|
Transcripts |
Peptides |
|||
|---|---|---|---|---|
| 63 | 100 | 63 | 100 | |
| De Novo (CLC assembly cell) |
75% |
72% |
- |
- |
| Cufflinks |
76% |
78% |
- |
- |
| Partek genomics suite* |
33% |
24% |
- |
- |
| ESTs |
70% |
69% |
- |
- |
| TGICL |
84% |
81% |
66% |
62% |
| CAP3 |
97% |
95% |
75% |
75% |
| Final collection | 97% | 95% | 75% | 75% |
The percentage of sequences found by each step of the transcriptome reconstruction is given.
*Partek percentages are lower as the program was used to define transcripts in very limited regions.