Table 3.
Splice junction sequence distribution
| Donor | GC | GT | GA | AT | CT | Others |
|---|---|---|---|---|---|---|
| Gold standard |
135 (56%) |
95 (40%) |
11 (4%) |
|
|
|
| ESTs |
13266 (39%) |
4708 (14%) |
1203 (4%) |
414 (1%) |
1122 (3%) |
13376 (39%) |
| Cufflinks |
44991 (61%) |
27374 (37%) |
|
708 (1%) |
285 |
|
| JGI best transcript |
80404 (82%) |
14387 (15%) |
1180 (1%) |
108 |
427 |
1135 (1%) |
|
Acceptor |
AG |
AC |
GC |
AT |
|
Others |
| Gold standard |
241 (100%) |
|
|
|
|
|
| Cufflinks |
70512 (98.6%) |
812 (1%) |
182 |
29 |
|
|
| JGI best transcript | 95694 (98%) | 250 | 277 | 75 | 1331 (1.4%) |