Table 4.
Mapping of 15 Asian genomes onto the VCG, YH and GRCh37 reference genomes
| CDX samples | HG00879 | HG00844 | HG00851 | HG00864 | HG00879 | |
|---|---|---|---|---|---|---|
|
Reference |
GRCh37 |
46,809,092 |
54,343,732 |
58,459,936 |
41,735,844 |
46,809,092 |
| |
(96.14%) |
(95.58%) |
(97.78%) |
(97.80%) |
(96.14%) |
|
| |
YH |
46,963,414 |
54,578,732 |
58,711,122 |
41,929,952 |
46,963,414 |
| |
(96.46%) |
(95.99%) |
(98.20%) |
(98.25%) |
(96.46%) |
|
| |
VCG |
47,025,644 |
54,677,084 |
58,817,318 |
42,017,702 |
47,025,644 |
| |
(96.59%) |
(96.16%) |
(98.37%) |
(98.46%) |
(96.59%) |
|
| |
CHD samples |
NA18698 |
NA18699 |
NA18126 |
NA18126 |
NA18691 |
|
Reference |
GRCh37 |
9,570,212 |
9,900,966 |
12,832,078 |
11,818,302 |
15,160,036 |
| |
(74.52%) |
(83.42%) |
(70.94%) |
(64.55%) |
(61.13%) |
|
| |
YH |
9,554,028 |
9,899,632 |
12,825,240 |
11,826,910 |
15,179,378 |
| |
(74.39%) |
(83.41%) |
(70.90%) |
(64.60%) |
(61.20%) |
|
| |
VCG |
9,590,720 |
9,931,332 |
12,870,814 |
11,880,666 |
15,228,994 |
| |
(74.68%) |
(83.68%) |
(71.16%) |
(64.89%) |
(61.40%) |
|
| |
JPT samples |
NA18988 |
NA18985 |
NA19084 |
NA18984 |
NA18960 |
|
Reference |
GRCh37 |
31,213,781 |
4,235,400 |
34,476,427 |
9,353,246 |
71,376,941 |
| |
(89.77%) |
(97.06%) |
(98.70%) |
(96.88%) |
(89.93%) |
|
| |
YH |
31,338,365 |
4,236,640 |
34,514,636 |
9,359,975 |
71,711,466 |
| |
(90.13%) |
(97.09%) |
(98.81%) |
(96.95%) |
(90.35%) |
|
| |
VCG |
31,410,518 |
4,236,680 |
34,500,530 |
9,361,169 |
71,898,286 |
| (90.34%) | (97.09%) | (98.76%) | (96.96%) | (90.59%) | ||