Table 1.
Characteristics of white lupin de novo assemblies
| Parameter | LAGI01* | This work^ | LAGI02# |
|---|---|---|---|
|
Kmer length |
29 |
67 |
- |
|
No. of reads |
277,224,180 |
133,045,174 |
- |
|
No. of contigs |
125,821 |
46,383 |
65,097 |
|
Average contig length |
1,155 |
896 |
1,625 |
|
% GC |
39.6 |
40.03 |
39.4 |
|
Longest contig |
15,514 |
28,229 |
26,640 |
| Total bases | 145,286,000 | 41,550,474 | 105,789,289 |
*reference: [26].
^de novo assembly of the five analysed root tissues.
#merged assemblies after removal of reads < 200 bp and with no BLAST hit.