Table 1.
Name | Nucleotide sequence 1 | Amino acid residues 2 |
---|---|---|
Degenerate primers (based on Rana perezi ADH8) | ||
Degenerate forward outer |
5′-ATGTGCACTGCGGGIAARGWIATHA-3′ |
1-8 |
Degenerate reverse outer |
5′-TAGTCTTTTGGRTTIADRCAYTC-3′ |
237-244 |
Degenerate forward inner |
5′-ATTACATGTAAGGCIGCIGTIGC-3′ |
7-14 |
Degenerate reverse inner |
5′-GGCTTTTGGRAAYTTRTCYTTRT-3′ |
223-230 |
Specific forward primers (used in combination with 3′-end adaptors) | ||
ADH1B outer |
5′-GTATAGTGGAAAGTGTGGGAGAG-3′ |
72-79 |
ADH1B inner |
5′-CATACATTGGACTCTTGTTGGAC-3′ |
119-126 |
ADH3 outer |
5′-CTGAATACACTGTTGTAGC-A-3′ |
148-154 |
ADH3 inner |
5′-CAACTGGTTATGGAGCTGTG-3′ |
178-184 |
ADH8B outer |
5′-AGCACTTTTACAGAATACAG-3′ |
144-150 |
ADH8B inner |
5′-AGATTCCTCCAGGATCTACG-3′ |
186-192 |
ADH9 outer |
5′-GCTAAAGTACAGCAAGGTAG-3′ |
189-194 |
ADH9 inner |
5′-GAATCATTGGAGTAGACATT-3′ |
219-225 |
Specific reverse primers for ADH8B (used in combination with the above specific forward primers) | ||
ADH8B reverse outer |
5′-TCAACAGGATGTCAGGCTGCAAATG-3′ |
Nucleotides 61–37 of non-coding 3′-end |
ADH8B reverse inner | 5′-AATGACCGTAGTGGACTTCACACGA-3′ | Nucleotides 40–16 of non-coding 3′-end |
1Degenerate nucleotides are R (A or G), W (A or T), H (A or C or T) and I (inosine, able to base pair with any natural nucleotide). 2Numbering refers to amino acid residues unless otherwise indicated.