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. 2014 Mar 20;15:216. doi: 10.1186/1471-2164-15-216

Table 1.

Oligonucleotide primers for amplification of X. laevis ADHs

Name Nucleotide sequence 1 Amino acid residues 2
Degenerate primers (based on Rana perezi ADH8)
Degenerate forward outer
5′-ATGTGCACTGCGGGIAARGWIATHA-3′
1-8
Degenerate reverse outer
5′-TAGTCTTTTGGRTTIADRCAYTC-3′
237-244
Degenerate forward inner
5′-ATTACATGTAAGGCIGCIGTIGC-3′
7-14
Degenerate reverse inner
5′-GGCTTTTGGRAAYTTRTCYTTRT-3′
223-230
Specific forward primers (used in combination with 3′-end adaptors)
ADH1B outer
5′-GTATAGTGGAAAGTGTGGGAGAG-3′
72-79
ADH1B inner
5′-CATACATTGGACTCTTGTTGGAC-3′
119-126
ADH3 outer
5′-CTGAATACACTGTTGTAGC-A-3′
148-154
ADH3 inner
5′-CAACTGGTTATGGAGCTGTG-3′
178-184
ADH8B outer
5′-AGCACTTTTACAGAATACAG-3′
144-150
ADH8B inner
5′-AGATTCCTCCAGGATCTACG-3′
186-192
ADH9 outer
5′-GCTAAAGTACAGCAAGGTAG-3′
189-194
ADH9 inner
5′-GAATCATTGGAGTAGACATT-3′
219-225
Specific reverse primers for ADH8B (used in combination with the above specific forward primers)
ADH8B reverse outer
5′-TCAACAGGATGTCAGGCTGCAAATG-3′
Nucleotides 61–37 of non-coding 3′-end
ADH8B reverse inner 5′-AATGACCGTAGTGGACTTCACACGA-3′ Nucleotides 40–16 of non-coding 3′-end

1Degenerate nucleotides are R (A or G), W (A or T), H (A or C or T) and I (inosine, able to base pair with any natural nucleotide). 2Numbering refers to amino acid residues unless otherwise indicated.