Table 1.
Predicted TAL effector targeted genes in C. sinensis that are transcriptionally regulated by Xc in the presence of Ch or, by the heterologous expression of the TAL effector
| Microarray data (fold change) | Sweet orange genes with | Homologous gene description | Functional category | References |
|---|---|---|---|---|
| |
PthA2 binding sites |
|
|
|
| PthA2 x GUS (4.0) |
orange1.1g032466m.g |
Pepper UPA22 (UPA22) |
GA response |
[10,31] |
| |
orange1.1g031880m.g |
Tobacco rac-like GTPase 1 (RAC) |
Auxin response |
[53] |
| |
orange1.1g001197m.g |
Rat transcription activator BRG1 (BRG1) |
Cell growth |
[54] |
| PthA2 x GUS (-3.1) |
orange1.1g023431m.g |
Xyloglucan endotransglucosylase (XET) |
Cell growth |
[55] |
| |
orange1.1g040761m.g |
Castor bean LOB domain protein (LOB2) |
Defense |
[56] |
| PthA2 x GUS (-3.1) |
orange1.1g037640m.g |
Tobacco UDP-glucosyltransferase (UDPGT) |
Defense |
[57] |
| |
PthA4 binding sites |
|
|
|
| Xc + Ch x Ch (3.8) |
orange1.1g024897m.g |
Tobacco 14-3-3 protein (14-3-3) |
Cell growth |
[58-60] |
| PthA4 x GUS (11.4) |
orange1.1g017949m.g |
Citrus limetta dioxygenase (DIOX) |
Cell growth |
[61,62] |
| PthA4 x GUS (5.2) |
orange1.1g018649m.g |
Tobacco cysteine proteinase (CP) |
Defense |
[63,64] |
| |
orange1.1g037138m.g |
C. trifoliata NBS-LRR protein (CCNBS1) |
Defense |
[65] |
| |
PthC1 binding sites |
|
|
|
| |
orange1.1g041266m.g |
Tomato self pruning-interacting protein 1 (SIP1) |
Cell growth |
[66] |
| |
orange1.1g010756m.g |
Potato Ca+2-dependent protein kinase (CDPK) |
Cell growth |
[67] |
| |
orange1.1g039072m.g |
Potato CC-NBS-LRR protein (CCNBS2) |
Defense |
[68] |
| |
orange1.1g042296m.g |
Sunflower CC-NBS-LRR protein (CCNBS3) |
Defense |
[69] |
| |
Multiple EBEs |
|
|
|
| |
PthA2, PthA4, PthC1 |
|
|
|
| |
orange1.1g046669m.g |
Tobacco Avr9/Cf9 elicited protein 146 (AE146) |
Defense |
[70] |
| |
PthA4, PthC1 |
|
|
|
| Xc + Ch x Ch (8.8) | orange1.1g026556m.g | Aspen LOB domain 1 (LOB1) | Cell growth | [71] |