Table 2.
The sequence analysis of DGGE bands from the zebrafish GI tract
| Phylum | Class | Family | Closest relative | Strain | GenBank accession no. | % similarity | Isolates (Band) |
|---|---|---|---|---|---|---|---|
| Firmicutes |
|
Leuconostocaceae |
Weissella cibaria |
AC26 |
KF515539 |
100 |
L1 |
| Leuconostoc holzapfelii |
IMAU62126 |
KF515541 |
97 |
L3 |
|||
| Lactococcus raffinolactis |
S56-2 |
KF515542 |
100 |
L4 |
|||
| Lactococcus lactis |
LD11 |
KF515543 |
100 |
L5 |
|||
| Lactococcus plantarum |
DSM 20686 |
KF515544 |
99 |
L6 |
|||
| Lactococcus lactis |
SS11A |
KF515548 |
99 |
L10 |
|||
| Veillonellaceae |
Veillonella sp. |
S101 |
KF515546 |
100 |
L8 |
||
| Streptococcaceae |
Streptococcus sp. |
LVRI-122 |
KF515547 |
100 |
L9 |
||
| Proteobacteria |
β-Proteobacteria |
Burkholderiaceae |
Limnobacter sp. |
F3 |
KF515551 |
98 |
L13 |
| Comamonadaceae |
Comamonas sp. |
SB20 |
KF515554 |
99 |
L16 |
||
| γ-proteobacteria |
Sinobacteraceae |
Hydrocarboniphaga daqingensis |
B2-9 |
KF515549 |
97 |
L11 |
|
| Moraxellaceae |
Acinetobacter sp. |
CHE4-1 |
KF515550 |
100 |
L12 |
||
| Sphingomonadaceae |
Citrobacter freundii |
T7 |
KF515552 |
95 |
L14 |
||
| Enterobacteriaceae |
Pantoea rodasii |
ORC6 |
KF515553 |
100 |
L15 |
||
| Salmonella sp. |
Co9936 |
KF515555 |
96 |
L17 |
|||
| Citrobacter werkmanii |
HTGC |
KF515556 |
98 |
L18 |
|||
| Aeromonadaceae |
Aeromonas caviae |
BAB556 |
KF515557 |
96 |
L19 |
||
| |
|
|
Uncultured bacterium |
S2-2-660 |
KF515540 |
100 |
L2 |
| Uncultured bacterium | B2-2 | KF515545 | 100 | L7 |