Table 1.
Property type | Category | Amino acid |
---|---|---|
Hydrophobicity | Polar | R, K, E, D, Q, N |
Neutral | G, A, S, T, P, H, Y | |
Hydrophobic | C, V, L, I,M, F,W | |
Polarizability | 0-0.108 | G, A, S, D, T |
0.128-0.186 | C, P, N, V, E, Q, I, L | |
0.219-0.409 | K, M, H, F, R, Y, W | |
NVVa | 0-2.78 | G, A, S, C, T, P, D |
2.95-4.0 | N, V, E, Q, I, L | |
4.43-8.08 | M, H, K, F, R, Y, W | |
Polarity | 4.9-6.2 | L, I, F, W, C, M, V, Y |
8.0-9.2 | P, A, T, G, S | |
10.4-13.0 | H, Q, R, K, N, E, D | |
SSPb | Helix | Predicted by SSpro [31] |
Strand | ||
Coil | ||
Solvent | Buried | Predicted by ACCpro [32] |
Exposed |
anormalized van der Waals volume; bsecondary structure propensity.