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. Author manuscript; available in PMC: 2014 May 22.
Published in final edited form as: Nanoscale. 2013 Jun 3;5(13):5692–5702. doi: 10.1039/c3nr01039b

Table 1.

F-actin–ABP structural determination techniques

Technique Advantages Limitations
X-ray crystallography
  • Atomic resolution

  • Suitable for G-actin

  • No 3D crystal structures for F-actin–ABP complexes

NMR
  • Atomic resolution

  • Dynamic information

  • Large sample amounts, protein labeling, >40 kDa difficult

Electron crystallography
  • nm to atomic resolution

  • Well ordered 2D crystals, technically difficult

Electron microscopy
  • Study of large complexes like F-actin

  • Study interactions between actin monomers

  • Electron dense staining and UHV, resolution limit ~ 5 Å

Cryo-EM
  • 3.5–4 Å resolution

  • More informative ABP–F-actin complex architecture

  • Multiple orientations of ABP–F-actin complexes

  • <100 kDa difficult

  • Not suitable for analyzing ABP induced changes in individual filaments

Atomic force microscopy
  • μm to atomic resolution

  • No fixing, electron dense staining, UHV

  • Quantitative 3D structural information on

  • single ABP–F-actin complexes

  • Study of ABP–F-actin structure heterogeneity by measuring individual helix without averaging

  • Measurement of nanoscale assembly of ABPs on F-actin for binding cooperativity determination

  • Inexpensive equipment compared to the above techniques; simple instrumentation design and data interpretation

  • Surface technique

  • Immobilization of ABP–F-actin on substrates

  • Relatively new tool in ABP–F-actin structural studies

Light microscopy/FRET/TIRF
  • Dynamic studies

  • mm to ~300 nm resolution range

  • Most commonly used technique for ABP–F- actin binding cooperativity determination

  • Diffraction limit ~ 200–300 nm