Table 2. Information of used primers.
Primer name | Primer sequences | Primer position (on genomic sequence of E. granulosus (G1) allele 1 (KF528663) | Product size (bp) |
1. Primers to amplify p29 gDNA | |||
Echi gP29F Forward primer (5′-3′) | TAAGCTGTGGGAACTAGTT | P −47 upstream of the start-ATG | 1302 |
Echi gP29R Reverse primer (5′-3′) | TATGTGAACAAGCTAACAGG | P+55 downstream of the stop-TAG | |
2. Primers to amplify p29 cDNA | |||
Echi cP29F Forward primer (5′-3′) | ATGTCCGGATTTGACGTTACTAAG | Exon 1: P1–P24 | 732 |
Echi cP29R Reverse primer (5′-3′) | CTACTCGCCCAGCATCATCATACT | Exon 7: P1201–P1181 | |
3. Primers used for sequencing | |||
Echi P29E5R Reverse primer (5′-3′) | CTGTTCCGCAGTCTTAG | Exon 5: P864–P848 | |
T7 Forward | TAATACGACTCACTATAGGG | ||
SP6 Reverse | ATTTAGGTGACACTATAG | ||
4. MAS-PCR primers | |||
EgG1P29A1F Forward primer (5′-3′) | CAGCAAGATCATCACC * | Exon2: P179–P194 | 195 |
EgG1P29A1R Reverse primer (5′-3′) | AAGACAACACCATATCTTAG * | Intron 2: P374–P355 | |
EgG1P29A2F Forward primer (5′-3′) | ACCCTATTCATTTTTGCT * | Intron 3: P525–P542 | 258 |
EgG1P29A2R Reverse primer (5′-3′) | TTTCTAAGTGGGATAAAGG * | Intron 4: P783–P765 | |
5. Primers to amplify p29 cDNA (for protein expression) | |||
CACC-p29-Forward (5′-3′) | CACCATGTCCGGATTTGACGTTACTAAG | ||
p29-Reverse (5′-3′) | CTACTCGCCCAGCATCATCATACT |
*Allele specific 3′-base in each primer.