Table 2. Lysine residues in SIV Gag predicted to become ubiquitinated.
Peptide | Position | Score | Threshold |
PDCKLVLKGLGVNPT | 336 | 2.51 | 0.3 |
GVGGPGQKARLMAEA | 360 | 2.13 | 0.3 |
QGCWKCGKMDHVMAK | 419 | 1.78 | 0.3 |
The full coding sequence of SIV Gag was analyzed by a Bayesian Discriminant Method algorithm (http://bdmpub.biocuckoo.org/). The selected amino acids obtained the highest score for this prediction.