Table 2.
Top | iHS | Windows, Selected by the Presence of at Least a Single SNP with an | iHS | > 5 with Window Start and End Points Calculated as the Distance Required for EHH to Decay to 0.05 for SNPs with | iHS | > 3.29 (top 1% of the expected distribution).
| Chromosome | Window Start (kb along Chromosome) | Window End (kb along Chromosome) | Region Size (kb) | Number of SNPs | Genes within Region |
|---|---|---|---|---|---|
| 1 | 163 | 184 | 21 | 4 | PF3D7_0103600-PF3D7_0104200 |
| 2 | 324 | 552 | 227 | 2 | PF3D7_020800-PF3D7_0213600 |
| 5 | 808 | 1,035 | 227 | 3 | PF3D7_0519500-PF3D7_0524900 |
| 6 | 548 | 1,275 | 727 | 28 | PF3D7_0613500-PF3D7_0630400 |
| 7 | 339 | 522 | 183 | 15 | PF3D7_0707300-PF3D7_0711700 |
| 9 | 1,126 | 1,419 | 293 | 16 | PF3D7_0927700-PF3D7_0935800 |
| 10 | 1,208 | 1,552 | 344 | 18 | PF3D7_1029700-PF3D7_1038600 |
| 12 | 694 | 1,095 | 401 | 10 | PF3D7_1217600-PF3D7_1227100 |
| 12 | 1,454 | 2,050 | 596 | 7 | PF3D7_1234800-PF3D7_1250100 |
| 13 | 93 | 193 | 101 | 8 | PF3D7_1301600-PF3D7_1303800 |
Note.—Bold, windows which overlap mdr1 and crt on chromosomes 5 and 7, respectively.